tRNA Gene Summary

Overview
High confidence set 417
tRNAs decoding standard 20 AA 415
Selenocysteine tRNAs (TCA) 2
Notable atypical predictions  
Anticodon/isotype mismatch 2
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 85
Secondary filter (low feature scores, possible rep. element) 91

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 34)
Pro AGG
1
Arg TCT
5
Leu AAG
1
Leu CAA
5
Phe GAA
1
Ile TAT
5
Tyr ATA
1
Tyr GTA
14
Cys ACA
1
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
33
GGC
2
CGC
5
TGC
11
51
GlyACC
 
GCC
15
CCC
13
TCC
11
39
ProAGG
11
GGG
2
CGG
4
TGG
9
26
ThrAGT
10
GGT
 
CGT
6
TGT
6
22
ValAAC
12
GAC
 
CAC
18
TAC
7
37
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
1
CGA
4
TGA
5
ACT
1
GCT
9
 
 
 
 
31
ArgACG
8
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
8
TCT
6
32
LeuAAG
13
GAG
 
CAG
10
TAG
4
 
 
 
 
CAA
8
TAA
6
41
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
15
 
 
 
 
15
AsnATT
2
GTT
36
 
 
 
 
38
Lys 
 
 
 
CTT
26
TTT
20
46
AspATC
1
GTC
19
 
 
 
 
20
Glu 
 
 
 
CTC
13
TTC
14
27
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
21
TTG
10
31
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
18
GAT
6
CAT
 
TAT
5
29
iMet/Met 
 
 
 
CAT
10/11
 
 
21
TyrATA
1
GTA
16
 
 
 
 
17
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
1
GCA
36
 
 
 
 
37
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
2
2