tRNA Gene Summary

Overview
High confidence set 416
tRNAs decoding standard 20 AA 415
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 2
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 85
Secondary filter (low feature scores, possible rep. element) 92

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 34)
Pro AGG
1
Arg TCT
5
Leu AAG
1
Leu CAA
5
Phe GAA
1
Ile TAT
5
Tyr ATA
1
Tyr GTA
14
Cys ACA
1

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 93487
Number of Codons: 40662582

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
33
GGC
2
CGC
5
TGC
11
51
GCT
1.84
GCC
2.77
GCG
0.74
GCA
1.58
6.93%
GlyACC
 
GCC
15
CCC
13
TCC
11
39
GGT
1.08
GGC
2.22
GGG
1.65
GGA
1.65
6.6%
ProAGG
11
GGG
2
CGG
4
TGG
9
26
CCT
1.75
CCC
1.98
CCG
0.69
CCA
1.69
6.11%
ThrAGT
10
GGT
 
CGT
6
TGT
6
22
ACT
1.31
ACC
1.89
ACG
0.61
ACA
1.51
5.32%
ValAAC
12
GAC
 
CAC
18
TAC
7
37
GTT
1.1
GTC
1.45
GTG
2.81
GTA
0.71
6.07%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
11
GGA
1
CGA
4
TGA
5
ACT
1
GCT
9
 
 
 
 
31
TCT
1.52
TCC
1.77
TCG
0.44
TCA
1.22
AGT
1.21
AGC
1.95
 
 
 
 
8.11%
ArgACG
8
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
8
TCT
6
32
CGT
0.45
CGC
1.04
CGG
1.14
CGA
0.62
 
 
 
 
AGG
1.2
AGA
1.22
5.67%
LeuAAG
13
GAG
 
CAG
10
TAG
4
 
 
 
 
CAA
8
TAA
6
41
CTT
1.32
CTC
1.96
CTG
3.96
CTA
0.72
 
 
 
 
TTG
1.29
TTA
0.77
10.02%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
15
 
 
 
 
15
TTT
1.76
TTC
2.03
 
 
 
 
3.79%
AsnATT
2
GTT
36
 
 
 
 
38
AAT
1.7
AAC
1.91
 
 
 
 
3.61%
Lys 
 
 
 
CTT
26
TTT
20
46
 
 
 
 
AAG
3.19
AAA
2.44
5.63%
AspATC
1
GTC
19
 
 
 
 
20
GAT
2.18
GAC
2.51
 
 
 
 
4.69%
Glu 
 
 
 
CTC
13
TTC
14
27
 
 
 
 
GAG
3.96
GAA
2.9
6.86%
HisATG
 
GTG
10
 
 
 
 
10
CAT
1.09
CAC
1.51
 
 
 
 
2.6%
Gln 
 
 
 
CTG
21
TTG
10
31
 
 
 
 
CAG
3.42
CAA
1.23
4.65%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
18
GAT
6
CAT
 
TAT
5
29
ATT
1.6
ATC
2.08
 
 
ATA
0.75
4.43%
iMet/Met 
 
 
 
CAT
10/11
 
 
21
 
 
 
 
ATG
2.2
 
 
2.2%
TyrATA
1
GTA
16
 
 
 
 
17
TAT
1.22
TAC
1.53
 
 
 
 
2.75%
Supres 
 
TCA
2
CTA
 
TTA
2
4
Stop 
 
TGA
0.16
TAG
0.08
TAA
0.1
0.34%
CysACA
1
GCA
36
 
 
 
 
37
TGT
1.06
TGC
1.26
 
 
 
 
2.32%
Trp 
 
 
 
CCA
8
 
 
8
 
 
 
 
TGG
1.32
 
 
1.32%
SelCys 
 
 
 
 
 
TCA
2
2
 
 
 
 
 
 
 
 
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