tRNA Gene Summary

Overview
High confidence set 417
tRNAs decoding standard 20 AA 415
Selenocysteine tRNAs (TCA) 2
Notable atypical predictions  
Anticodon/isotype mismatch 2
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 85
Secondary filter (low feature scores, possible rep. element) 91

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 28)
Arg TCT
5
Leu CAA
5
Ile TAT
5
Tyr GTA
13

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 93487
Number of Codons: 40662582

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
22
GGC
 
CGC
4
TGC
8
34
GCT
1.84
GCC
2.77
GCG
0.74
GCA
1.58
6.93%
GlyACC
 
GCC
14
CCC
5
TCC
9
28
GGT
1.08
GGC
2.22
GGG
1.65
GGA
1.65
6.6%
ProAGG
9
GGG
 
CGG
4
TGG
7
20
CCT
1.75
CCC
1.98
CCG
0.69
CCA
1.69
6.11%
ThrAGT
9
GGT
 
CGT
5
TGT
6
20
ACT
1.31
ACC
1.89
ACG
0.61
ACA
1.51
5.32%
ValAAC
9
GAC
 
CAC
11
TAC
5
25
GTT
1.1
GTC
1.45
GTG
2.81
GTA
0.71
6.07%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
9
GGA
 
CGA
4
TGA
4
ACT
 
GCT
8
 
 
 
 
25
TCT
1.52
TCC
1.77
TCG
0.44
TCA
1.22
AGT
1.21
AGC
1.95
 
 
 
 
8.11%
ArgACG
7
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
5
TCT
6
28
CGT
0.45
CGC
1.04
CGG
1.14
CGA
0.62
 
 
 
 
AGG
1.2
AGA
1.22
5.67%
LeuAAG
9
GAG
 
CAG
9
TAG
3
 
 
 
 
CAA
6
TAA
4
31
CTT
1.32
CTC
1.96
CTG
3.96
CTA
0.72
 
 
 
 
TTG
1.29
TTA
0.77
10.02%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
10
 
 
 
 
10
TTT
1.76
TTC
2.03
 
 
 
 
3.79%
AsnATT
 
GTT
20
 
 
 
 
20
AAT
1.7
AAC
1.91
 
 
 
 
3.61%
Lys 
 
 
 
CTT
15
TTT
12
27
 
 
 
 
AAG
3.19
AAA
2.44
5.63%
AspATC
 
GTC
13
 
 
 
 
13
GAT
2.18
GAC
2.51
 
 
 
 
4.69%
Glu 
 
 
 
CTC
8
TTC
7
15
 
 
 
 
GAG
3.96
GAA
2.9
6.86%
HisATG
 
GTG
10
 
 
 
 
10
CAT
1.09
CAC
1.51
 
 
 
 
2.6%
Gln 
 
 
 
CTG
13
TTG
6
19
 
 
 
 
CAG
3.42
CAA
1.23
4.65%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
14
GAT
3
CAT
 
TAT
5
22
ATT
1.6
ATC
2.08
 
 
ATA
0.75
4.43%
iMet/Met 
 
 
 
CAT
9/10
 
 
19
 
 
 
 
ATG
2.2
 
 
2.2%
TyrATA
 
GTA
13
 
 
 
 
13
TAT
1.22
TAC
1.53
 
 
 
 
2.75%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.16
TAG
0.08
TAA
0.1
0.34%
CysACA
 
GCA
29
 
 
 
 
29
TGT
1.06
TGC
1.26
 
 
 
 
2.32%
Trp 
 
 
 
CCA
7
 
 
7
 
 
 
 
TGG
1.32
 
 
1.32%
SelCys 
 
 
 
 
 
TCA
2
2
 
 
 
 
 
 
 
 
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