Gene: tRNA-Lys-CTT-2-1

Overview
Organism Homo sapiens
Locus chr1:145395522-145395594 (-) View in Genome Browser
GtRNAdb Gene Symbol tRNA-Lys-CTT-2-1
HGNC Symbol TRK-CTT2-1
RNAcentral ID URS00001AD596_9606
tRNAscan-SE ID chr1.trna118
GtRNAdb 2009
Legacy Name and Score
chr1.trna119-LysCTT (80.47 bits)
Predicted tRNA Isotype / Anticodon Lys CTT
Top Scoring / Second Best Scoring Isotype Model Lys (122.7 bits) / Arg (88.9 bits)
Predicted Anticodon and Top Isotype Model Consistent
Rank of tRNA Isodecoder 2 out of 16
Upstream / Downstream Sequence AGAAGACGCCAGTAATCAGT / CTGTGTTTTTATTTAACCCT
Intron None
Possible Pseudogene No
Gene Score 87.8
Mature tRNA Score 87.8
HMM Score 68.80
Secondary Structure Score 19.00
Atypical Features None
Genome Browser View with Related Data Tracks Zoomed in (750 bp flanking features)
Zoomed out (750 kbp flanking features)
Sequence
Genomic Sequence
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG
Secondary Structure (nested bp)
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Predicted Mature tRNA
GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG
Alignments
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<...<. GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-1-1 Sc: 88.0 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-1-2 Sc: 88.0 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-2-1 Sc: 87.8 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-2-2 Sc: 87.8 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-2-3 Sc: 87.8 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-2-4 Sc: 87.8 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-2-5 Sc: 87.8 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-3-1 Sc: 83.1 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG tRNA-Lys-CTT-4-1 Sc: 82.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<...<. GCCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCGCACGTTGGG...CG tRNA-Lys-CTT-5-1 Sc: 69.3 >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<.<<...<. GCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCATGGGTTTGAGCCCCACGTTTGG...TG tRNA-Lys-CTT-7-1 Sc: 64.8 >>>>>>....>>>........<<<..>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<...<. GCCCGACTACCTCAGTCGGTGGAGCATGGGACTCTTCATCCCAGG...........GtTGTGGGTTCGAGCCCCACATTGGG...CA tRNA-Lys-CTT-9-1 Sc: 58.2 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<...<. GCCTGGCTAGCTCAGTCGGCAAAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGCTCGAGCTCCATGTTGGG...CG tRNA-Lys-CTT-8-1 Sc: 57.8 >..>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<.....<. G..CAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCATGGGTTCGTGCCCCATGTTGGGtgcCA tRNA-Lys-CTT-11-1 Sc: 56.6 >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<................>>>>.........<<<<<<<<<<...<. GCCCAGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTCAGG...........GtTGTGGATTCGTGCCCCATGCTGGG...TG tRNA-Lys-CTT-10-1 Sc: 54.8 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<...<. GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG...........GtCGTGGGTTCGAGCCCCACGTTGGG...CG DK9991_CTT_HUMAN_CY >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<...<. GCCTGGATAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCAGG...CA tRNA-Lys-TTT-1-1 Sc: 89.0 GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCGGG...CG tRNA-Lys-TTT-3-1 Sc: 87.8 GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCGGG...CG tRNA-Lys-TTT-3-2 Sc: 87.8 GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCGGG...CG tRNA-Lys-TTT-3-3 Sc: 87.8 GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCGGG...CG tRNA-Lys-TTT-3-4 Sc: 87.8 GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCGGG...CG tRNA-Lys-TTT-3-5 Sc: 87.8 GCCTGGATAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCAGG...CG tRNA-Lys-TTT-2-1 Sc: 87.7 GCCTGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCAGG...CG tRNA-Lys-TTT-4-1 Sc: 86.8 GCCTGGGTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTCCAGG...CG tRNA-Lys-TTT-6-1 Sc: 85.2 GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCGGGGTTCAAGTCCCTGTTCGGG...CG tRNA-Lys-TTT-5-1 Sc: 84.9 >>>>>>>..>.>>........<<.<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<...<. GCCTGGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACG...........GtGCAGGGTTCAAGTCCCTGTTCAGG...CG tRNA-Lys-TTT-7-1 Sc: 74.9 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.................>.>>.......<<.<.<<<<<<...<. ACCCAGATAGCTCAGTCAGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAAGGTTCATGTCCCTTTTTGGG...TG tRNA-Lys-TTT-11-1 Sc: 50.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<...<. GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG...........GtCCAGGGTTCAAGTCCCTGTTCGGG...CG DK9990_TTT_HUMAN_CY
.......>...>.>>>.........>>>>..........................<<<<....>>>>>.........<<<<<.................>>>>>.......<<<<<.......<<<.<.<.... .......GA..CGAGC......T.AGCTCAG................TCGGT.A.GAGCA...TGGGACTCTTAA..TCCCAGG...........GtC.GTGGGTTTGAGCCCCAT.......GTTGGGCA... tRNA-Lys-CTT-6-1 Sc: 63.1 (filtered) best isotype model: Lys Sc: 93.7 .......>>..>>>>>.........>>>>..........................<<<<....>>>>>.........<<<<<.................>.>>>.......<<<.<.......<<<<<<<.... .......GC..CCGGA......G.AGCTCAG................T.GGGtA.GAGCA...TCAGACTTTTAA..TCTGAGG...........GtC.CAGGGTTCAAGTCCTCG.......TTCGGGCA... tRNA-Lys-TTT-8-1 Sc: 65.1 (filtered) best isotype model: Lys Sc: 85.6 .......>>..>>>>>.........>>>>..........................<<<<....>>.>>.........<<.<<.................>>>>>.......<<<<<.......<<<<<<<.... .......GC..CCGGA......T.AGTTCAG................TTGGT.A.GAGCA...TCAGACT..TAA..TCAGAGG...........GtC.CAGGGTTCAAGTCCCTG.......TTTGGGTG... tRNA-Sup-TTA-1-1 Sc: 57.1 (filtered) best isotype model: Lys Sc: 83.7 ........>..>>>>>.........>.>>..........................<<.<....>>>>>.........<<<<<.................>>>>>.......<<<<<.......<<<<<<..... .......AC..CTGGG......T.AGCTCAG................TAGGT.A.GAACA...TCAGACTTTTAA..TCTGAGG...........GtC.TAGGGTTCAAGTCCCTG.......TCCAGGCG... tRNA-Lys-TTT-9-1 Sc: 61.2 (filtered) best isotype model: Lys Sc: 82.7 ........>..>>>>..........>.>>..........................<<.<....>>>>>.........<<<<<.................>>>>>.......<<<<<........<<<<<..... .......CC..CCGGC......T.GGCTCAG................TCAGT.A.GATCA...TGAGACTCTTAA..TCTCAGG...........GtC.GTGGGTTCACGCCCCAC.......ACTGGGCG... tRX-Lys-NNN-1-1 Sc: 46.8 (filtered) best isotype model: Lys Sc: 80.2 .......>>..>.>>>.........>>>>..........................<<<<....>>>>...........<<<<.................>>>>>.......<<<<<.......<<<.<<<.... .......GC..CAGGA......T.AGTTCAG................GTGGT.A.GAGCA...TCAGACTTTTAA..CCTGAGG...........GtT.CAGGGTTCAAGTCTCTG.......TTTGGGCG... tRNA-Lys-TTT-10-1 Sc: 49.9 (filtered) best isotype model: Lys Sc: 76.6 .......>>..>>>>>.........>>>>..........................<<<<....>>>>>.........<<<<<.................>>>>.........<<<<.......<<<<<<<.... .......AC..CTGGG......T.AGCTTAG................TTGGT.A.GAGCA...TTGGACTTTTAA..TTTGAGG...........GcC.CAGGTTTCAAGTCCCTG.......TTTGGGTG... tRNA-Lys-TTT-12-1 Sc: 53.8 (filtered) best isotype model: Lys Sc: 73.3 .......>>..>>>>...........>>............................<<.....>>>>>.........<<<<<.................>>>>>.......<<<<<........<<<<<<.... .......GCcaCCAGCa.....T.GTCTCAG................TCGGT.A.TAGTG...TGAGACTCTTAA..TCTCAGG...........GtC.GTGGGTTCAAGCCCCACa.......TTGGGCG... tRNA-Lys-CTT-12-1 Sc: 48.3 (filtered) best isotype model: Lys Sc: 73.0 .......>>..>>>>>.........>>>>..........................<<<<....>>>.>.........<.<<<.................>>>>>.......<<<<<.......<<<<<<<.... .......GC..CTGGA......T.AGCTCCT................TCGGT.A.GAGCAtcaTCAGACTTTTAA..TGTGAGG...........GtC.CAGGGTTCAAGTTCCTG.......TTTGGGCG... tRX-Lys-NNN-2-1 Sc: 41.4 (filtered) best isotype model: Lys Sc: 72.2 .......>>..>>>>>.........>.>>..........................<<.<....>.>>>.........<<<.<..................>>>>.......<<<<........<<<<<<<.... .......GT..CTAGC......T.AGATCAG................TTGGT.A.GAGCA...TAAGACTCTTAA..TCTCAGG...........GtC.ATGGGTTTGAGCCCTAC.......GTTGGGCG... tRNA-Lys-CTT-13-1 Sc: 46.9 (filtered) best isotype model: Lys Sc: 69.8 .......>>...>>>>.........>>>>..........................<<<<......>>>.........<<<...................>>>>>.......<<<<<.......<<<<.<<.... .......GC..CCAGC......T.AGCTCAG................CCGGT.A.GAGCA...CAAGACTCTTAA..TCTCAGG...........GtC.GTGGGTTTGAGCCCTGT.......GTTGAGCA... tRNA-Lys-CTT-14-1 Sc: 48.5 (filtered) best isotype model: Lys Sc: 69.8 .......>>..>..>>.........>>>>..........................<<<<....>>>>>.........<<<<<.................>>>>>.......<<<<<.......<<..<<<.... .......TA..AACAAcccagaT.AGCTCAG................TTGAT.A.GAGCA...TCAGACTTTTAA..TCTGAGG...........GtC.CAGGGTTCATGTCCCTG.......TTCCTTAA... tRNA-Lys-TTT-14-1 Sc: 47.3 (filtered) best isotype model: Lys Sc: 68.3 .......>>...>.>>...........>>..........................<<......>>>>>.........<<<<<.................>>>>>.......<<<<<.......<<.<.<<.... .......GC..ACTGC......A.CAGTCAG................TCAGT.A.GAGCA...TGGGACTCTTAA..TCCCAGG...........GtC.GTGGGTTCAAGCCCCAC.......GTTGGGCG... tRX-Lys-NNN-3-1 Sc: 35.4 (filtered) best isotype model: Lys Sc: 65.8 ...........>>>>..........>>>>..........................<<<<....>>>>>.........<<<<<.................>>>>>.......<<<<<........<<<<...... .......AA..CCGAA......T.AGCTTAG................TTGAT.G.AAGCG...TGAGACTCTTAA..TCTCAGG...........GtA.GTGGGTTCAAGCCCCAC.......ATTGGACA... tRNA-Lys-CTT-15-1 Sc: 40.3 (filtered) best isotype model: Lys Sc: 64.7 .......>>...>>>...........>>>..........................<<<.....>>>>>.........<<<<<.................>>>>>.......<<<<<........<<<.<<.... .......GC..CTGGC......T.ACCTCAG................TTGGT.A.GAGCA...TGGGACTCTTAA..TCCCAGA...........GtCaGTGGGTTCAAGCCTCAC.......ATTGAGTG... tRNA-Lys-CTT-16-1 Sc: 35.8 (filtered) best isotype model: Lys Sc: 64.5 .......>>..>...>.........>>>............................<<<....>>>>>.........<<<<<.................>>>>>.......<<<<<.......<...<<<.... .......GG..CAGGC.........GCT.AG................TCAGT.A.GAGCA...TGAGACTCTTAA..TCTCAGG...........GtC.GTGGGTTCGAGCCCCAC..atc..GGGCGCCA... tRX-Lys-NNN-4-1 Sc: 34.5 (filtered) best isotype model: Lys Sc: 59.1 .......>>..>>.>>.........>>>>..........................<<<<....>>>>...........<<<<.................>>>>>.......<<<<<.......<<.<<<<.... .......GC..CTGGG......T.AGCTCAG................TCGGT.A.GAGCTa..TCAGACTTTTAG..CCTGAGG...........AtT.CAGGGTTCAATCCCTTG.......CTGGGGCG... tRNA-Lys-TTT-13-1 Sc: 46.0 (filtered) best isotype model: Lys Sc: 57.8 .......>>..>.>>>.........>>>>..........................<<<<.....>>>>.........<<<<..................>>.>>.......<<.<<.......<<<.<<<.... .......GT..TGGGG......T.AACTCAG................TTGGT.A.GAGTA...GCAGACTTTTCA..TCTGAGG...........GtC.CAGGGTTTAAGTCCATG.......TCCAGGCA... tRNA-Lys-TTT-15-1 Sc: 34.5 (filtered) best isotype model: Lys Sc: 51.9 .......>>..>>.>>.........>................................<....>>>>>.........<<<<<.................>>>>>.......<<<<<.......<<.<<<<.... gttttgtTT..CTTAT......TgGGGGAAG................TCGGT.A.GAACA...TGAGATTCTTAA..TCTCAGG...........GtC.CTGGGTTTAAGCCCCAG.......GTTGGGAGcca tRX-Lys-NNN-5-1 Sc: 31.1 (filtered) best isotype model: Lys Sc: 47.6 .......>>..>>>>>..........>>>..........................<<<.....>>>>>.........<<<<<.................>>.............<<.......<<<<<<<.... .......GC..CCAAC......T.GGTTCAG................TCGGT.A.GAGAA...TGAGACTCTTAA..TCTCAG............GtC.ATAGATTCATGTCACAT.......GTTGGGTG... tRX-Lys-NNN-6-1 Sc: 29.9 (filtered) best isotype model: Lys Sc: 40.8 .......>...>>>............>>>..........................<<<.....>>>.>.........<.<<<.................>>>>>.......<<<<<.........<<<.<.... .......GA..CTC........T.GTCTCAAaaaaaaaaaaaaaaaaT.GGTtA.GAGTG...TGGTGCTAATAA..CCCCAAG...........GtC.GCAGGTTTGATCCCTGT.......AGGGGCCA... tRX-Ile-NNN-4-1 Sc: 20.5 (filtered) best isotype model: Lys Sc: 14.9
Isotype-Specific Model Scores
AlaArgAsnAspCysGlnGluGlyHisIleLeuLysMetPheProSeCSerThrTrpTyrValiMet
54.188.983.426.153.633.721.938.837.782.821.4122.772.155.129.4No Hit11.972.059.642.147.1-26.3
mt-Alamt-Argmt-Asnmt-Aspmt-Cysmt-Glnmt-Glumt-Glymt-Hismt-Ilemt-LeuTAAmt-LeuTAGmt-Lysmt-Metmt-Phemt-Promt-SerGCTmt-SerTGAmt-Thrmt-Trpmt-Tyrmt-Val
No HitNo Hit-12.3No HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo Hit16.9No HitNo HitNo HitNo HitNo Hit-19.0No Hit

Top score2nd highest score3rd highest score
DNA Variants (13)
tRNA Position Genomic Position dbSNP ID Ref/Alt Allele Common SNP 1K Genome Effect
1 (5′ Acceptor Stem)chr1:145395594rs751259766G / TNoNobase pair mismatch
1 (5′ Acceptor Stem)chr1:145395594rs751259766G / CNoNobase pair mismatch
9 (Acceptor-D-arm-linker)chr1:145395586rs587603238A / GNoYessubstitution in loop
22 (3′ D-arm)chr1:145395573rs188130522G / CNoYesbase pair mismatch
28 (5′ Anticodon Stem)chr1:145395567rs782201226G / ANoNobase pair mismatch
33 (Anticodon Loop)chr1:145395562rs185786903T / GNoYesuniversal base change
33 (Anticodon Loop)chr1:145395562rs185786903T / CNoYesuniversal base change
34 (Anticodon Loop)chr1:145395561rs782621401C / TNoNosynonymous anticodon change
49 (5′ T-arm)chr1:145395546rs147303235G / TNoYesbase pair mismatch
56 (T-Psi-C Loop)chr1:145395539rs782373167C / TNoNouniversal base change
61 (3′ T-arm)chr1:145395534rs782673353C / TNoNoGU base pair
61 (3′ T-arm)chr1:145395534rs782673353C / ANoNobase pair mismatch
70 (3′ Acceptor Stem)chr1:145395525rs763957479G / ANoNobase pair mismatch
Expression Profiles