tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (Sept 2017) scan results (on host zam.soe.ucsc.edu)
Started: Wed Nov 22 16:51:28 PST 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         455
Seqs w/at least 1 hit:  43
Bases read:             3209286105 (x2 for both strands)
Bases in tRNAs:         93098
tRNAs predicted:        1201
Av. tRNA length:        77
Script CPU time:        469.77 s
Scan CPU time:          19398.00 s
Scan speed:             330.9 Kbp/sec

First pass search(es) ended: Wed Nov 22 17:14:47 PST 2017

Infernal Stats:
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Candidate tRNAs read:     1201
Infernal-confirmed tRNAs:     853
Bases scanned by Infernal:  117118
% seq scanned by Infernal:  0.0 %
Script CPU time:          7.40 s
Infernal CPU time:            578.85 s
Scan speed:               202.3 bp/sec

Infernal analysis of tRNAs ended: Wed Nov 22 17:28:14 PST 2017

Overall scan speed: 313804.9 bp/sec