Gene: tRNA-Asn-GTT-11-2

Overview
Organism Homo sapiens
Locus chr1:149646451-149646524 (-) View in Genome Browser
GtRNAdb Gene Symbol tRNA-Asn-GTT-11-2
HGNC Symbol TRN-GTT11-2
RNAcentral ID URS0000624B2D_9606
tRNAscan-SE ID chr1.trna105
Predicted tRNA Isotype / Anticodon Asn GTT
Top Scoring / Second Best Scoring Isotype Model Asn (97.1 bits) / Arg (55.7 bits)
Predicted Anticodon and Top Isotype Model Consistent
Rank of tRNA Isodecoder 11 out of 27
Upstream / Downstream Sequence CAGTGGAGTTAGCAGTGCTT / CTTATTGGAACTTTTAAAGC
Intron None
Possible Pseudogene No
Gene Score 53.5
Mature tRNA Score 53.5
HMM Score 38.90
Secondary Structure Score 14.60
Atypical Features C30:C40
Sequence
Genomic Sequence
GTCTCTGTGGTGCAATCGGTtAGCGCGTTCCGCTGTTAACCGAAAGCtTGGTGGTTCGAGCCCACCCAGGGATG
Secondary Structure (nested bp)
>>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<.
Predicted Mature tRNA
GUCUCUGUGGUGCAAUCGGUUAGCGCGUUCCGCUGUUAACCGAAAGCUUGGUGGUUCGAGCCCACCCAGGGAUG
Alignments
Asn tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<<<<.... GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGATCCCACCCAGGGACG... tRNA-Asn-GTT-1-1 Sc: 81.5 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-1 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-2 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-3 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-4 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-5 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-6 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-7 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-2-8 Sc: 80.9 GTCTCTGTGGCGCAATCGGTtA.GCGCATTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-3-1 Sc: 79.7 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........AtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-4-1 Sc: 77.7 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACTG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGGACG... tRNA-Asn-GTT-5-1 Sc: 76.5 GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACTG.AAAG...........GtTGGTGGTTCGAGCCCACCCGGGGACG... tRNA-Asn-GTT-9-1 Sc: 74.9 GTCTCTGTGGCGCAATGGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCATCCAGGGACG... tRNA-Asn-GTT-6-1 Sc: 73.8 >>.>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<.<<.... GTCTCTGTGGCGTAGTCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCACCCAGGAACG... tRNA-Asn-GTT-7-1 Sc: 73.5 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<<<<.... GTCTCTGTGGCGCAATCGGCtA.GCGCGTTTGGCTGTTAACTA.AAAG...........GtTGGTGGTTCGAACCCACCCAGAGGCG... tRNA-Asn-GTT-8-1 Sc: 69.8 >>>>.>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<.<<<<.... GTCTCTGTGGCGCAGTCGGTtA.GCGCGTTCGGCTGTTAACCG.GAAG...........GtTGGTGGTTCGAGACCACCCAAGGACG... tRNA-Asn-GTT-26-1 Sc: 68.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<.................>>>>.......<<<<.<<<<<<<.... GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACTG.AAAG...........GtTAGTGGTTCGAGCCCACCCGGGGACG... tRNA-Asn-GTT-9-2 Sc: 68.6 >>>>>>>..>>>>..........<<<<.>.>>>.......<<<..<................>>>>>.......<<<<<<<<<<<<.... GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.CAAG...........GtTGGTGGTTCCAGCCCACCCAGGGACG... tRNA-Asn-GTT-24-1 Sc: 67.9 >>.>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<.<<.... GTCTCTGTGGCGCAATTGGTtA.GCGCGTTCGGTTGTTAACCGtAAAG...........GtTGGTGGTTCGAGCCCACCCAGGAACG... tRNA-Asn-GTT-25-1 Sc: 64.1 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>.>>.......<<.<<<<<<<<<.... GTCTCTGTGGCGCAATCGGCtA.GCGCGTTTGGCTGTTAACTA.AAAG...........GtTGGCGGTTCGAACCCACCCAGAGGCG... tRNA-Asn-GTT-10-1 Sc: 62.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<<<<.... GTCTCTGTGGCGCAATCGGCtA.GCGCTTTTGGCTGTTAACTA.AAAG...........GtTGGTGGTTTGAACCCACCCAGAGGCG... tRNA-Asn-GTT-27-1 Sc: 62.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>.........<<<<<<<<<<<.... GTCTCTGTGGCGCAATCGGCtA.GCGCGTTTGGCTGTTAACTA.AAAA...........GtTGGTGGTTCGAACACACCCAGAGGCG... tRNA-Asn-GTT-12-1 Sc: 54.5 >>>>>>>..>>>>..........<<<<.>>>.>.......<.<.<<................>>>>>.......<<<<<<<<<<<<.... GTCTCTGTGGTGCAATCGGTtA.GCGCGTTCCGCTGTTAACCG.AAAG...........CtTGGTGGTTCGAGCCCACCCAGGGATG... tRNA-Asn-GTT-11-1 Sc: 53.5 GTCTCTGTGGTGCAATCGGTtA.GCGCGTTCCGCTGTTAACCG.AAAG...........CtTGGTGGTTCGAGCCCACCCAGGGATG... tRNA-Asn-GTT-11-2 Sc: 53.5 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<<<<.... GTCTCTGTGGCGCAATGGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGTTCGAGCCCATCCAGGGACG... DN9990_GTT_HUMAN_CY GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........AtTGGTGGTTCGAGCCCACCCAGGGACG... DN9991_GTT_HUMAN_CY GTCTCTGTGGCGCAATCGGTtA.GCGCGTTCGGCTGTTAACCG.AAAG...........GtTGGTGGNTCGAGCCCACCCAGGGACGcca RN9990_GTT_HUMAN_LIVER/PLAC GGTCCCATGGTGTAAT.GGTtA.GCACTCTGGACTNTGAATCC.AGCG...........A.TCCGAGTTCAAATCTCGGTGGGACCTcca RN9991_NTG_HUMAN_CY >>>>>>>..>>>>..........<<<<.>>>>>.......<<<.<<................>>>>>.......<<<<<<<<<<<<.... RN9991_NTG_HUMAN_CY
>>>>>>>..>>>>............<<<<.>..>>.........<<..<................>>>>>.......<<<<<<<<<<<<. GTCTCTGTGGTGCAATCGGTtA...GCGCGTTCGGCTGTT..AACCATAAG...........GtTGGTGGTTAGAGACCACCCAGGGACG tRNA-Asn-GTT-13-1 Sc: 52.0 (filtered) best isotype model: Asn Sc: 89.2 >>>>>>>..>>>>............<<<<.>>>>...........<<<<................>>>>>.......<<<<<<<<<<<<. GTCTCTGTGGCGCAATCGGTtA...GCGCGTTTGACTGTT..AACTGAAAG...........GtTGGTGGTGCAAGCCCATCCAGGGATG tRNA-Asn-GTT-16-1 Sc: 46.1 (filtered) best isotype model: Asn Sc: 86.5 GTCTCTGTGGCGCAATCGGTtA...GCGCGTTTGACTGTT..AACTGAAAG...........GtTGGTGGTGCAAGCCCATCCAGGGATG tRNA-Asn-GTT-16-3 Sc: 46.1 (filtered) best isotype model: Asn Sc: 86.5 .>>>>.>..>.>>............<<.<.>>>>>.........<<<<<................>>>>>.......<<<<<<.<<<<.. ATCTCCGTGGAGCAATTGGTtA...GCGCGTTCGGCTGTT..AACCGGAAA...........GtTGGTGGTTCGAGCCTACCCAGGGACG tRNA-Asn-GTT-15-1 Sc: 42.4 (filtered) best isotype model: Asn Sc: 86.4 ATCTCCGTGGAGCAATTGGTtA...GCGCGTTCGGCTGTT..AACCGGAAA...........GtTGGTGGTTCGAGCCTACCCAGGGACG tRNA-Asn-GTT-15-2 Sc: 42.4 (filtered) best isotype model: Asn Sc: 86.4 ATCTCCGTGGAGCAATTGGTtA...GCGCGTTCGGCTGTT..AACCGGAAA...........GtTGGTGGTTCGAGCCTACCCAGGGACG tRNA-Asn-GTT-15-3 Sc: 42.4 (filtered) best isotype model: Asn Sc: 86.4 >>>>>>>..>>>>............<<<<.>>>>...........<<<<................>>>>>.......<<<<<<<<<<<<. GTCTCTGTGGTGCAATCGGTtA...GCGCGTTTGACTGTT..AACTGAAAG...........GtTGGTGGTGCAAGCCCATCCAGGGATG tRNA-Asn-GTT-16-5 Sc: 40.7 (filtered) best isotype model: Asn Sc: 82.2 >>>>>>>..>>>>............<<<<.>..>>.........<<..<................>>>>>.......<<<<<<<<<<<<. GTCTCTGTGGTGCAATCGGTtA...GCGCGTTCGGCTGTT..AACCATAAG...........GtTGGTGGTTACAGACCACCCAGGGACG tRNA-Asn-GTT-18-1 Sc: 44.1 (filtered) best isotype model: Asn Sc: 82.0 .>>>>.>..>.>>............<<.<.>>>>>.........<<<<<................>>>>>.......<<<<<<.<<<<.. ATCTCCGTGGAGCAATTGGTtA...GCGCGTTCGGCCGTT..AACCGGAAA...........GtTGGTGGTTCGAGCCTACCCAGGGACG tRNA-Asn-GTT-19-1 Sc: 37.7 (filtered) best isotype model: Asn Sc: 78.0 >>>>>>>..>>.>............<.<<.>>>>>.........<<<<<.................>>.>.......<.<<.<<<<<<<. GTCTCTGTGGCGCAATCGGTcA...GAGCGTTCGGCTATT..AACCGAACG...........GtGAGTAGTTCAAGACCACCCAGGGACG tRNA-Asn-ATT-1-1 Sc: 47.8 (filtered) best isotype model: Asn Sc: 76.9 GTCTCTGTGGCGCAATCGGTcA...GAGCGTTCGGCTATT..AACCGAACG...........GtGAGTAGTTCAAGACCACCCAGGGACG tRNA-Asn-ATT-1-2 Sc: 47.8 (filtered) best isotype model: Asn Sc: 76.9 >>>>>>...>>.>............<.<<.>>.>>.........<<.<<................>>>>>.......<<<<<.<<<<<<. GTCTCTGTGGCACAATCGGTtA...GCGCGTTCGGCTGTT..AATCTAGAG...........GtTGGTGGTTAGAGCCCACTGAGGGATG tRNA-Asn-GTT-21-1 Sc: 42.4 (filtered) best isotype model: Asn Sc: 70.8 GTCTCTGTGGCACAATCGGTtA...GCGCGTTTGGCTGTT..AATCTAAAG...........TtTGGTGGTTAGAGCCCACTGAGGGACG tRX-Asn-NNN-2-1 Sc: 47.0 (filtered) best isotype model: Asn Sc: 70.3 GTCTCTGTGGCACAATCGGTtA...GCGCGTTTGGCTGTT..AATCTAAAG...........TtTGGTGGTTAGAGCCCACTGAGGGACG tRX-Asn-NNN-3-1 Sc: 47.0 (filtered) best isotype model: Asn Sc: 70.3 >>>>>>>..>>>>............<<<<.>>>>>.........<<<<<................>>>>>.......<<<<<<<<<<<<. GTCTCTGTGGCGCCATCGGTtA...GTGCCTTCGGCTGTTtgAACCGAAAG...........GcTGGTGGTTCAAGCCCACCCAGAGATG tRNA-Asn-GTT-20-1 Sc: 41.0 (filtered) best isotype model: Asn Sc: 67.9 >>>>>.>..>>>>............<<<<.>>>>...........<<<<................>>>>>.......<<<<<<.<<<<<. GTTTCTGTAGCGCGATCGGTtA...GCGCCTTCGGCTGTT..AAACGAAAG...........GtTGGTGGTTCGTTCCCACCCCGGGACA tRNA-Asn-GTT-17-1 Sc: 39.0 (filtered) best isotype model: Asn Sc: 67.6 >>>>>>...>>.>............<.<<.>>.>>.........<<.<<................>>>>>.......<<<<<.<<<<<<. GTCTCTGTGGCACAATCGGTtA...GAGCGTTCGGCTGTT..AATCTAAAG...........GtTGGTGGCTAGAACCCACTGAGGGACG tRNA-Asn-GTT-22-1 Sc: 37.2 (filtered) best isotype model: Asn Sc: 57.6 >>>>>>>..>>>>............<<<<.>>>.>.........<.<<<................>.>>>.......<<<.<<<<<<<<. GTCTCTGTTGCGCAATC....A...GCGCGTTTGGCTGTT..AACAGAAAG...........GcTGGTGGTCCGAGCCCAACCAGGGACT tRX-Asn-NNN-1-1 Sc: 20.4 (filtered) best isotype model: Asn Sc: 52.5
Isotype-Specific Model Scores
AlaArgAsnAspCysGlnGluGlyHisIleLeuLysMetPheProSeCSerThrTrpTyrValiMet
6.055.797.16.514.320.89.8-0.920.137.6No Hit40.149.311.0No HitNo Hit-6.645.530.212.954.1-14.9
mt-Alamt-Argmt-Asnmt-Aspmt-Cysmt-Glnmt-Glumt-Glymt-Hismt-Ilemt-LeuTAAmt-LeuTAGmt-Lysmt-Metmt-Phemt-Promt-SerGCTmt-SerTGAmt-Thrmt-Trpmt-Tyrmt-Val
No HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo Hit

Top score2nd highest score3rd highest score