Gene: tRNA-Met-CAT-4-1

Overview
Organism Homo sapiens
Locus chr6:26735370-26735442 (-) View in Genome Browser
GtRNAdb Gene Symbol tRNA-Met-CAT-4-1
HGNC Symbol TRM-CAT4-1
RNAcentral ID URS0000703910_9606
tRNAscan-SE ID chr6.trna177
GtRNAdb 2009
Legacy Name and Score
chr6.trna164-MetCAT (75.76 bits)
Predicted tRNA Isotype / Anticodon Met CAT
Top Scoring / Second Best Scoring Isotype Model Met (108.2 bits) / Thr (83.4 bits)
Predicted Anticodon and Top Isotype Model Consistent
Rank of tRNA Isodecoder 4 out of 7
Upstream / Downstream Sequence GCGCGTTGATGCACTTCGTC / GCTTTTGCAAGTGAACGCTT
Intron None
Possible Pseudogene No
Gene Score 80.2
Mature tRNA Score 80.2
HMM Score 56.30
Secondary Structure Score 23.90
Atypical Features U31:U39
Sequence
Genomic Sequence
GCCCTCTTAGCGCAGCGGGcAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAGCCTCAGAGAGGGCA
Secondary Structure (nested bp)
>>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
Predicted Mature tRNA
GCCCUCUUAGCGCAGCGGGCAGCGCGUCAGUCUCAUAAUCUGAAGGUCCUGAGUUCGAGCCUCAGAGAGGGCA
Alignments
Met tRNAs
>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTCTTAGCGCAGT.GGGcA.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCGAGCCTCAGAGAGGGCA... tRNA-Met-CAT-2-1 Sc: 82.7 GCCTCGTTAGCGCAGTAGGT.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCGTGAGTTCGATCCTCACACGGGGCA... tRNA-Met-CAT-1-1 Sc: 82.3 GCCCTCTTAGCGCAGC.GGGcA.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCGAGCCTCAGAGAGGGCA... tRNA-Met-CAT-4-1 Sc: 80.2 GCCCTCTTAGCGCAGC.GGGcA.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCGAGCCTCAGAGAGGGCA... tRNA-Met-CAT-4-2 Sc: 80.2 GCCCTCTTAGCGCAGC.GGGcA.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCGAGCCTCAGAGAGGGCA... tRNA-Met-CAT-4-3 Sc: 80.2 GCCCTCTTAGCGCAGCTGGC.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCAAGCCTCAGAGAGGGCA... tRNA-Met-CAT-5-1 Sc: 79.2 GCCCTCTTAGCGCAGCTGGC.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCAAGCCTCAGAGAGGGCA... tRNA-Met-CAT-5-2 Sc: 79.2 GCCTCCTTAGCGCAGTAGGC.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCGAACCTCAGAGGGGGCA... tRNA-Met-CAT-3-1 Sc: 77.4 GCCTCCTTAGCGCAGTAGGC.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAGTTCGAACCTCAGAGGGGGCA... tRNA-Met-CAT-3-2 Sc: 77.4 GCCTCGTTAGCGCAGTAGGC.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCGTGAGTTCGAGCCTCACACGGGGCA... tRNA-Met-CAT-6-1 Sc: 77.4 GCCCTCTTAGTGCAGCTGGC.A.GCGCGTCAGTTTCATAATCTGAAA...........GtCCTGAGTTCAAGCCTCAGAGAGGGCA... tRNA-Met-CAT-7-1 Sc: 66.2 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGCAGAGTGGCGCAGC.GGA.A.GCGTGCTGGGCCCATAACCCAGAG...........GtCGATGGATCGAAACCATCCTCTGCTA... DM9990_CAT_HUMAN_CY AGCAGAGTGGCGCAGC.GGA.A.GCGTGCTGGGCCCATAACCCAGAG...........GtCGATGGATCGAAACCATCCTCTGCTA... DX9990_CAT_HUMAN_CY AGCAGAGTGGCGCAGC.GGA.A.GCGTGCTGGGCCCATAACCCAGAG...........GtCGATGGATCTAAACCATCCTCTGCTA... DX9991_CAT_HUMAN_CY >>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCGTTAGCGCAGTAGGT.A.GCGCGTCAGTCTCATAATCTGAAG...........GtCGTGAGTTCGATCCTCACACGGGGCAcca RM9990_CAT_HUMAN_HELA-CELLS >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGCAGAGTGGCGCAGC.GGA.A.GCGTGCTGGGCCCATAACCCAGAG...........GtCGATGGATCGAAACCATCCTCTGCTAcca RX9990_CAT_HUMAN_PLACENTA
>>>>>.>..>>>>...........<<<<.>>>>.........<<<<................>>.>.>............<<.<<......<.<<<<<. GTCTTCTTAGCGCAGT.GAGcA..GCGCGTCAGTCTCATAATCTGAAG...........GtCCTGAtGTTCGAGC.....CTGAG......AAAAGGCA tRX-Met-NNN-2-1 Sc: 41.7 (filtered) best isotype model: Met Sc: 67.9 >>>>>>>..>..>...........<..<.>>>>.........<<<<................>.>>.>............<<<.<......<<<<<<<. GCCTTCTTAGCCCTGGAGGC.A..GCACATCAGTCTCATAATCTGAAG...........GtCCCGA.GCTTGAAC.....CTCAG......AGAGGGCA tRX-Met-NNN-1-1 Sc: 24.1 (filtered) best isotype model: Met Sc: 47.7 >>>>>>>..>>>>...........<<<<.>>.>.........<.<<................>>>>.>............<<<<<......<<<<<<<. GCAGCTGTGGCTCAGT.GGAaA..GAGCATCAGTCTGGGTATCAGAAG...........A.CCTAG.GT...........CCTAGccc...CAGCTGTA tRX-Pro-NNN-1-1 Sc: 24.8 (filtered) best isotype model: Met Sc: 25.7 >>>.>>>...>>>...........<<<...>>>>.......<<<<.................>>>>.>............<<<<<......<<<.<<<. GTGGATA..GCCCAGC.GGCtAt.GGGAGCCGGGCTCTCACTCTGAC............GtCCTGG.GTTCAAGT.....CCCAG......TGTGCACA tRNA-Glu-CTC-16-1 Sc: 27.3 (filtered) best isotype model: Met Sc: 6.8
Isotype-Specific Model Scores
AlaArgAsnAspCysGlnGluGlyHisIleLeuLysMetPheProSeCSerThrTrpTyrValiMet
42.769.364.541.252.647.330.838.450.778.319.779.4108.265.729.7No Hit14.783.452.433.575.0-9.1
mt-Alamt-Argmt-Asnmt-Aspmt-Cysmt-Glnmt-Glumt-Glymt-Hismt-Ilemt-LeuTAAmt-LeuTAGmt-Lysmt-Metmt-Phemt-Promt-SerGCTmt-SerTGAmt-Thrmt-Trpmt-Tyrmt-Val
No HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo Hit

Top score2nd highest score3rd highest score