Gene: tRNA-Pro-TGG-3-1

Overview
Organism Homo sapiens
Locus chr5:181188854-181188925 (-) View in Genome Browser
GtRNAdb Gene Symbol tRNA-Pro-TGG-3-1
HGNC Symbol TRP-TGG3-1
RNAcentral ID URS00002D40C8_9606
tRNAscan-SE ID chr5.trna14
GtRNAdb 2009
Legacy Name and Score
chr5.trna14-ProTGG (76.15 bits)
Predicted tRNA Isotype / Anticodon Pro TGG
Top Scoring / Second Best Scoring Isotype Model Pro (121.0 bits) / Ala (67.1 bits)
Predicted Anticodon and Top Isotype Model Consistent
Rank of tRNA Isodecoder 3 out of 5
Upstream / Downstream Sequence CAGCGAGCAACTAGACAGCC / ACTTTTTCATTTTTTTTTTT
Intron None
Possible Pseudogene No
Gene Score 70.3
Mature tRNA Score 70.3
HMM Score 43.90
Secondary Structure Score 26.40
Atypical Features None
Sequence
Genomic Sequence
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC
Secondary Structure (nested bp)
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Predicted Mature tRNA
GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC
Alignments
Pro tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGATGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-1-1 Sc: 71.5 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-1 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-2 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-3 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-4 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-5 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-6 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-7 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-8 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC DP9990_AGG_HUMAN_CY >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-1-1 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-1-2 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-1-3 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGTGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-2-1 Sc: 65.9 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGTTGGTCTAGTGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-1-1 Sc: 74.9 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGGTTTGGGTCCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-2-1 Sc: 70.5 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-1 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-2 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-3 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-4 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-5 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC DP9991_TGG_HUMAN_CY
>>>>>>>..>>>............<<<.>.>>.>.......................<.<<.<..>.>.........<.<...>>>>>.......<<<<<.<<<<<<<. GGCTCGTTGGTCTAGGGGT.G..TGGTTC.TCGCTTAGGGaccacagggacaagccCGGGA.GA.CCCA.......AGAGGtCCCGGGTTCAAATCCCGG.ACGAGCCC tRNA-Pro-AGG-3-1 Sc: 36.6 (filtered) best isotype model: Pro Sc: 93.8 >>>>..>..>>>............<<<...>..>.......................<..<......................>>>>>.......<<<<<.<..<<<<. GGCTGGTTGGTCTAG.GGCtA..TGATTC.TCACTTAGGG................TGCAA.AAG...............GtCCTGGGTTCAAATCCCAG.AGGAGCCC tRNA-Pro-AGG-4-1 Sc: 28.9 (filtered) best isotype model: Pro Sc: 69.5 >>>.>.>..>>>............<<<.>.>>>>.......................<<<<.<....................>..>>.......<<..<.<.<.<<<. GGCCTGTTGGTCTAGAGGT.A..TGATTC.TCGCTTTGGG................TGCGA.GAG...............G.CCCCGGTGCGAGTCCCAG.AGGAGCCC tRNA-Pro-TGG-4-1 Sc: 27.6 (filtered) best isotype model: Pro Sc: 65.4 >>>>>.>..>.>............<.<.>.>>>.........................<<<.<....................>>>>>.......<<<<<.<.<<<<<. AGCAGTGTGGGCCAGTGGG.A..AG.TGCtCAGGCTTTGG................GGCTGgGAG...............GaTCTGGGTTTGAATCCCAG.CTCTGCTG tRX-Pro-NNN-2-1 Sc: 20.7 (filtered) best isotype model: Pro Sc: 13.2
Isotype-Specific Model Scores
AlaArgAsnAspCysGlnGluGlyHisIleLeuLysMetPheProSeCSerThrTrpTyrValiMet
67.139.8-8.853.550.951.850.961.958.627.419.0-3.928.04.7121.0No Hit4.756.650.329.560.9No Hit
mt-Alamt-Argmt-Asnmt-Aspmt-Cysmt-Glnmt-Glumt-Glymt-Hismt-Ilemt-LeuTAAmt-LeuTAGmt-Lysmt-Metmt-Phemt-Promt-SerGCTmt-SerTGAmt-Thrmt-Trpmt-Tyrmt-Val
No HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo Hit-12.6No HitNo HitNo HitNo HitNo HitNo Hit

Top score2nd highest score3rd highest score
DNA Variants (68)
tRNA Position Genomic Position dbSNP ID Ref/Alt Allele Common SNP 1K Genome Effect
1 (5′ Acceptor Stem)chr5:181188925rs540938728G / CNoYesbase pair mismatch
1 (5′ Acceptor Stem)chr5:181188925rs540938728G / ANoYesbase pair mismatch
2 (5′ Acceptor Stem)chr5:181188924rs904224994G / ANoNobase pair mismatch
3 (5′ Acceptor Stem)chr5:181188923rs575151898C / TNoYesGU base pair
3 (5′ Acceptor Stem)chr5:181188923rs575151898C / GNoYesbase pair mismatch
5 (5′ Acceptor Stem)chr5:181188921rs554971778C / TNoYesGU base pair
11 (5′ D-arm)chr5:181188915rs544309766T / CNoYesbase pair mismatch
12 (5′ D-arm)chr5:181188914rs912992455C / GNoNobase pair mismatch
13 (5′ D-arm)chr5:181188913rs923178596- / TNoNorepair bulge
13 (5′ D-arm)chr5:181188913rs768469067T / GNoNoGU base pair
13 (5′ D-arm)chr5:181188913rs768469067T / CNoNobase pair mismatch
14 (D-loop)chr5:181188912rs759139039A / GNoNouniversal base change
15 (D-loop)chr5:181188911rs866335106G / ANoNosubstitution in loop
16 (D-loop)chr5:181188910rs575578907G / CNoYessubstitution in loop
16 (D-loop)chr5:181188910rs575578907G / ANoYessubstitution in loop
18 (D-loop)chr5:181188909rs1020558984G / ANoNouniversal base change
19 (D-loop)chr5:181188908rs558823524G / ANoYesuniversal base change
21 (D-loop)chr5:181188906rs538743631A / GNoYesuniversal base change
22 (3′ D-arm)chr5:181188905rs975005619T / CNoNobase pair mismatch
23 (3′ D-arm)chr5:181188904rs963666169G / CNoNobase pair mismatch
24 (3′ D-arm)chr5:181188903rs957360962A / GNoNoGU base pair
27 (5′ Anticodon Stem)chr5:181188900rs909172337C / TNoNoGU base pair
29 (5′ Anticodon Stem)chr5:181188898rs983485882C / TNoNoGU base pair
29 (5′ Anticodon Stem)chr5:181188898rs983485882C / GNoNobase pair mismatch
30 (5′ Anticodon Stem)chr5:181188897rs906916817G / ANoNobase pair mismatch
31 (5′ Anticodon Stem)chr5:181188896rs749523282C / TNoNoGU base pair
36 (Anticodon Loop)chr5:181188891rs539013546G / ANoNonon synonymous anticodon change
37 (Anticodon Loop)chr5:181188890rs950839243G / ANoNosubstitution in loop
38 (Anticodon Loop)chr5:181188889rs774022624T / GNoNosubstitution in loop
38 (Anticodon Loop)chr5:181188889rs774022624T / CNoNosubstitution in loop
40 (3′ Anticodon Stem)chr5:181188887rs775805298C / TNoNoGU base pair
40 (3′ Anticodon Stem)chr5:181188887rs775805298C / ANoNobase pair mismatch
42 (3′ Anticodon Stem)chr5:181188885rs959897974A / GNoNoGU base pair
42 (3′ Anticodon Stem)chr5:181188885rs959897974A / CNoNobase pair mismatch
43 (3′ Anticodon Stem)chr5:181188884rs566331393G / ANoYesbase pair mismatch
44 (Variable Loop)chr5:181188883rs769868379A / CNoNosubstitution in loop
45 (Variable Loop)chr5:181188882rs904445488G / ANoNosubstitution in loop
46 (Variable Loop)chr5:181188881rs550986659G / ANoNosubstitution in loop
48 (Variable Loop)chr5:181188879rs1009922057C / GNoNosubstitution in loop
49 (5′ T-arm)chr5:181188878rs931959736C / ANoNobase pair mismatch
50 (5′ T-arm)chr5:181188877rs552706315C / TNoYesGU base pair
52 (5′ T-arm)chr5:181188875rs976006034G / CNoNobase pair mismatch
53 (5′ T-arm)chr5:181188874rs967716956G / CNoNobase pair mismatch
55 (T-Psi-C Loop)chr5:181188872rs536154657T / CNoYesuniversal base change
56 (T-Psi-C Loop)chr5:181188871rs913034916C / TNoNouniversal base change
57 (T-Psi-C Loop)chr5:181188870rs990397446A / CNoNosubstitution in loop
58 (T-Psi-C Loop)chr5:181188869rs957079241GTCCCGGGTTCAA / -NoNodeletion in loop
59 (T-Psi-C Loop)chr5:181188868rs933482789A / GNoNosubstitution in loop
60 (T-Psi-C Loop)chr5:181188867rs190688742T / GNoYessubstitution in loop
61 (3′ T-arm)chr5:181188866rs1034059377C / TNoNoGU base pair
62 (3′ T-arm)chr5:181188865rs922065129C / GNoNobase pair mismatch
63 (3′ T-arm)chr5:181188864rs550838192C / TNoYesGU base pair
63 (3′ T-arm)chr5:181188864rs550838192C / GNoYesbase pair mismatch
64 (3′ T-arm)chr5:181188863rs536690799G / CNoYesbase pair mismatch
64 (3′ T-arm)chr5:181188863rs536690799G / ANoYesbase pair mismatch
65 (3′ T-arm)chr5:181188862rs375141220G / CNoNobase pair mismatch
65 (3′ T-arm)chr5:181188862rs375141220G / ANoNobase pair mismatch
66 (3′ Acceptor Stem)chr5:181188861rs571221812A / CNoYesbase pair mismatch
67 (3′ Acceptor Stem)chr5:181188860rs570123610C / TNoYesGU base pair
67 (3′ Acceptor Stem)chr5:181188860rs570123610C / GNoYesbase pair mismatch
68 (3′ Acceptor Stem)chr5:181188859rs747508387G / TNoNobase pair mismatch
68 (3′ Acceptor Stem)chr5:181188859rs747508387G / ANoNobase pair mismatch
69 (3′ Acceptor Stem)chr5:181188858rs142022138A / GNoYesGU base pair
69 (3′ Acceptor Stem)chr5:181188858rs142022138A / CNoYesbase pair mismatch
70 (3′ Acceptor Stem)chr5:181188857rs758765849G / CNoNobase pair mismatch
70 (3′ Acceptor Stem)chr5:181188857rs758765849G / ANoNobase pair mismatch
71 (3′ Acceptor Stem)chr5:181188856rs752951544C / TNoNoGU base pair
72 (3′ Acceptor Stem)chr5:181188855rs898088052C / TNoNoGU base pair