Gene: tRNA-Pro-TGG-3-2

Overview
Organism Homo sapiens
Locus chr14:20684016-20684087 (+) View in Genome Browser
GtRNAdb Gene Symbol tRNA-Pro-TGG-3-2
HGNC Symbol TRP-TGG3-2
RNAcentral ID URS00002D40C8_9606
tRNAscan-SE ID chr14.trna6
GtRNAdb 2009
Legacy Name and Score
chr14.trna6-ProTGG (76.15 bits)
Predicted tRNA Isotype / Anticodon Pro TGG
Top Scoring / Second Best Scoring Isotype Model Pro (121.0 bits) / Ala (67.1 bits)
Predicted Anticodon and Top Isotype Model Consistent
Rank of tRNA Isodecoder 3 out of 5
Upstream / Downstream Sequence AAGCACCACTCAGCTACAGT / TCGTGGCTACTGTTTTTCCA
Intron None
Possible Pseudogene No
Gene Score 70.3
Mature tRNA Score 70.3
HMM Score 43.90
Secondary Structure Score 26.40
Atypical Features None
Sequence
Genomic Sequence
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC
Secondary Structure (nested bp)
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Predicted Mature tRNA
GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC
Alignments
Pro tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGATGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-1-1 Sc: 71.5 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-1 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-2 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-3 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-4 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-5 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-6 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-7 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-AGG-2-8 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTAGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC DP9990_AGG_HUMAN_CY >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-1-1 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-1-2 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-1-3 Sc: 70.2 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTCGGGTGTGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-CGG-2-1 Sc: 65.9 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCGTTGGTCTAGTGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-1-1 Sc: 74.9 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGGTTTGGGTCCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-2-1 Sc: 70.5 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-1 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-2 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-3 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-4 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC tRNA-Pro-TGG-3-5 Sc: 70.3 GGCTCGTTGGTCTAGGGGTA.TGATTCTCGCTTTGGGTGCGAGAG...........GtCCCGGGTTCAAATCCCGGACGAGCCC DP9991_TGG_HUMAN_CY
>>>>>>>..>>>............<<<.>.>>.>.......................<.<<.<..>.>.........<.<...>>>>>.......<<<<<.<<<<<<<. GGCTCGTTGGTCTAGGGGT.G..TGGTTC.TCGCTTAGGGaccacagggacaagccCGGGA.GA.CCCA.......AGAGGtCCCGGGTTCAAATCCCGG.ACGAGCCC tRNA-Pro-AGG-3-1 Sc: 36.6 (filtered) best isotype model: Pro Sc: 93.8 >>>>..>..>>>............<<<...>..>.......................<..<......................>>>>>.......<<<<<.<..<<<<. GGCTGGTTGGTCTAG.GGCtA..TGATTC.TCACTTAGGG................TGCAA.AAG...............GtCCTGGGTTCAAATCCCAG.AGGAGCCC tRNA-Pro-AGG-4-1 Sc: 28.9 (filtered) best isotype model: Pro Sc: 69.5 >>>.>.>..>>>............<<<.>.>>>>.......................<<<<.<....................>..>>.......<<..<.<.<.<<<. GGCCTGTTGGTCTAGAGGT.A..TGATTC.TCGCTTTGGG................TGCGA.GAG...............G.CCCCGGTGCGAGTCCCAG.AGGAGCCC tRNA-Pro-TGG-4-1 Sc: 27.6 (filtered) best isotype model: Pro Sc: 65.4 >>>>>.>..>.>............<.<.>.>>>.........................<<<.<....................>>>>>.......<<<<<.<.<<<<<. AGCAGTGTGGGCCAGTGGG.A..AG.TGCtCAGGCTTTGG................GGCTGgGAG...............GaTCTGGGTTTGAATCCCAG.CTCTGCTG tRX-Pro-NNN-2-1 Sc: 20.7 (filtered) best isotype model: Pro Sc: 13.2
Isotype-Specific Model Scores
AlaArgAsnAspCysGlnGluGlyHisIleLeuLysMetPheProSeCSerThrTrpTyrValiMet
67.139.8-8.853.550.951.850.961.958.627.419.0-3.928.04.7121.0No Hit4.756.650.329.560.9No Hit
mt-Alamt-Argmt-Asnmt-Aspmt-Cysmt-Glnmt-Glumt-Glymt-Hismt-Ilemt-LeuTAAmt-LeuTAGmt-Lysmt-Metmt-Phemt-Promt-SerGCTmt-SerTGAmt-Thrmt-Trpmt-Tyrmt-Val
No HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo HitNo Hit-12.6No HitNo HitNo HitNo HitNo HitNo Hit

Top score2nd highest score3rd highest score
DNA Variants (80)
tRNA Position Genomic Position dbSNP ID Ref/Alt Allele Common SNP 1K Genome Effect
2 (5′ Acceptor Stem)chr14:20684017rs569592039G / ANoYesbase pair mismatch
2 (5′ Acceptor Stem)chr14:20684017rs569592039G / CNoYesbase pair mismatch
2 (5′ Acceptor Stem)chr14:20684017rs569592039G / TNoYesbase pair mismatch
3 (5′ Acceptor Stem)chr14:20684018rs530688028C / TNoYesGU base pair
5 (5′ Acceptor Stem)chr14:20684020rs944218635C / GNoNobase pair mismatch
5 (5′ Acceptor Stem)chr14:20684020rs944218635C / TNoNoGU base pair
6 (5′ Acceptor Stem)chr14:20684021rs966114771G / CNoNobase pair mismatch
6 (5′ Acceptor Stem)chr14:20684021rs966114771G / TNoNobase pair mismatch
9 (Acceptor-D-arm-linker)chr14:20684024rs1053866448G / ANoNosubstitution in loop
10 (5′ D-arm)chr14:20684025rs900093456G / ANoNorestore Watson-Crick base pair
11 (5′ D-arm)chr14:20684026rs369242990T / CNoNobase pair mismatch
11 (5′ D-arm)chr14:20684026rs369242990T / GNoNobase pair mismatch
12 (5′ D-arm)chr14:20684027rs548780962C / GNoYesbase pair mismatch
12 (5′ D-arm)chr14:20684027rs548780962C / TNoYesGU base pair
13 (5′ D-arm)chr14:20684028rs890470266- / TNoNorepair bulge
13 (5′ D-arm)chr14:20684028rs567075943T / CNoYesbase pair mismatch
13 (5′ D-arm)chr14:20684028rs567075943T / GNoYesGU base pair
14 (D-loop)chr14:20684029rs534763815A / GNoYesuniversal base change
15 (D-loop)chr14:20684030rs958675452G / TNoNosubstitution in loop
18 (D-loop)chr14:20684032rs1035781671G / ANoNouniversal base change
19 (D-loop)chr14:20684033rs960486421G / ANoNouniversal base change
20 (D-loop)chr14:20684034rs976570117T / GNoNosubstitution in loop
21 (D-loop)chr14:20684035rs879827770A / GNoNouniversal base change
22 (3′ D-arm)chr14:20684036rs971053621T / ANoNorepair mismatch
23 (3′ D-arm)chr14:20684037rs1023507657G / ANoNobase pair mismatch
24 (3′ D-arm)chr14:20684038rs17516140A / GNoNoGU base pair
25 (3′ D-arm)chr14:20684039rs372746660T / GNoNobase pair mismatch
27 (5′ Anticodon Stem)chr14:20684041rs969279114C / ANoNobase pair mismatch
27 (5′ Anticodon Stem)chr14:20684041rs969279114C / TNoNoGU base pair
29 (5′ Anticodon Stem)chr14:20684043rs979780561C / TNoNoGU base pair
31 (5′ Anticodon Stem)chr14:20684045rs924950241C / GNoNobase pair mismatch
31 (5′ Anticodon Stem)chr14:20684045rs924950241C / TNoNoGU base pair
35 (Anticodon Loop)chr14:20684049rs935006262G / ANoNonon synonymous anticodon change
35 (Anticodon Loop)chr14:20684049rs935006262G / CNoNonon synonymous anticodon change
37 (Anticodon Loop)chr14:20684051rs540565980- / TNoYessubstitution in loop
37 (Anticodon Loop)chr14:20684051rs987874864G / ANoNosubstitution in loop
40 (3′ Anticodon Stem)chr14:20684054rs747215379C / ANoNobase pair mismatch
40 (3′ Anticodon Stem)chr14:20684054rs747215379C / GNoNobase pair mismatch
40 (3′ Anticodon Stem)chr14:20684054rs747215379C / TNoNoGU base pair
41 (3′ Anticodon Stem)chr14:20684055rs932030928- / GNoNorepair bulge
41 (3′ Anticodon Stem)chr14:20684055rs943832442G / CNoNobase pair mismatch
42 (3′ Anticodon Stem)chr14:20684056rs369746984- / TNoNorepair bulge
42 (3′ Anticodon Stem)chr14:20684056rs1039842871A / GNoNoGU base pair
43 (3′ Anticodon Stem)chr14:20684057rs921463706G / ANoNobase pair mismatch
43 (3′ Anticodon Stem)chr14:20684057rs921463706G / CNoNobase pair mismatch
44 (Variable Loop)chr14:20684058rs182484790A / CNoYessubstitution in loop
45 (Variable Loop)chr14:20684059rs931565407G / ANoNosubstitution in loop
46 (Variable Loop)chr14:20684060rs149815387G / ANoYessubstitution in loop
47 (Variable Loop)chr14:20684061rs887078953T / GNoNosubstitution in loop
48 (Variable Loop)chr14:20684062rs781396325C / ANoNosubstitution in loop
48 (Variable Loop)chr14:20684062rs781396325C / TNoNosubstitution in loop
49 (5′ T-arm)chr14:20684063rs1057191478C / ANoNobase pair mismatch
49 (5′ T-arm)chr14:20684063rs1057191478C / TNoNoGU base pair
51 (5′ T-arm)chr14:20684065rs188398460G / CNoYesbase pair mismatch
51 (5′ T-arm)chr14:20684065rs188398460G / TNoYesbase pair mismatch
52 (5′ T-arm)chr14:20684066rs192675097G / CNoYesbase pair mismatch
52 (5′ T-arm)chr14:20684066rs192675097G / TNoYesbase pair mismatch
53 (5′ T-arm)chr14:20684067rs1023455362G / ANoNobase pair mismatch
53 (5′ T-arm)chr14:20684067rs1023455362G / TNoNobase pair mismatch
54 (T-Psi-C Loop)chr14:20684068rs1022852454T / CNoNouniversal base change
56 (T-Psi-C Loop)chr14:20684070rs969645645C / ANoNouniversal base change
56 (T-Psi-C Loop)chr14:20684070rs969645645C / TNoNouniversal base change
58 (T-Psi-C Loop)chr14:20684072rs953577223- / TNoNouniversal base change
59 (T-Psi-C Loop)chr14:20684073rs1000761974A / CNoNosubstitution in loop
60 (T-Psi-C Loop)chr14:20684074rs764856991T / GNoNosubstitution in loop
61 (3′ T-arm)chr14:20684075rs1032681066C / GNoNobase pair mismatch
61 (3′ T-arm)chr14:20684075rs1032681066C / TNoNoGU base pair
62 (3′ T-arm)chr14:20684076rs146849858C / GNoYesbase pair mismatch
62 (3′ T-arm)chr14:20684076rs146849858C / TNoYesGU base pair
63 (3′ T-arm)chr14:20684077rs987765843C / GNoNobase pair mismatch
64 (3′ T-arm)chr14:20684078rs544090977G / ANoYesbase pair mismatch
64 (3′ T-arm)chr14:20684078rs544090977G / CNoYesbase pair mismatch
65 (3′ T-arm)chr14:20684079rs555996296G / ANoYesbase pair mismatch
66 (3′ Acceptor Stem)chr14:20684080rs894296662A / GNoNoGU base pair
67 (3′ Acceptor Stem)chr14:20684081rs574146777C / ANoYesbase pair mismatch
67 (3′ Acceptor Stem)chr14:20684081rs574146777C / GNoYesbase pair mismatch
68 (3′ Acceptor Stem)chr14:20684082rs139732426G / ANoYesbase pair mismatch
70 (3′ Acceptor Stem)chr14:20684084rs559575660G / ANoYesbase pair mismatch
70 (3′ Acceptor Stem)chr14:20684084rs559575660G / CNoYesbase pair mismatch
72 (3′ Acceptor Stem)chr14:20684086rs1048600594C / TNoNoGU base pair