tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 14:35:53 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         41
Seqs w/at least 1 hit:  14
Bases read:             22872713 (x2 for both strands)
Bases in tRNAs:         7954
tRNAs predicted:        83
Av. tRNA length:        95
Script CPU time:        2.76 s
Scan CPU time:          96.26 s
Scan speed:             475.2 Kbp/sec

First pass search(es) ended: Wed Aug 23 14:36:16 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     83
Infernal-confirmed tRNAs:     82
Bases scanned by Infernal:  9614
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.66 s
Infernal CPU time:            59.04 s
Scan speed:               162.8 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 14:37:39 PDT 2017

Overall scan speed: 288214.6 bp/sec