tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 14:37:48 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         665
Seqs w/at least 1 hit:  87
Bases read:             64877444 (x2 for both strands)
Bases in tRNAs:         42944
tRNAs predicted:        489
Av. tRNA length:        87
Script CPU time:        8.80 s
Scan CPU time:          366.56 s
Scan speed:             354.0 Kbp/sec

First pass search(es) ended: Wed Aug 23 14:42:08 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     489
Infernal-confirmed tRNAs:     391
Bases scanned by Infernal:  52724
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.71 s
Infernal CPU time:            312.03 s
Scan speed:               169.0 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 14:49:21 PDT 2017

Overall scan speed: 187751.2 bp/sec