tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 264
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 23
Predicted pseudogenes 104
Total tRNAs 391
Intron Summary (tRNAs with introns: 277)
Ala AGC
12
Ala CGC
3
Ala TGC
10
Gly ACC
1
Gly GCC
18
Gly CCC
5
Gly TCC
7
Pro AGG
5
Pro CGG
2
Thr AGT
5
Thr GGT
1
Thr TGT
2
Val AAC
6
Val GAC
1
Val CAC
3
Val TAC
2
Ser AGA
2
Ser CGA
2
Ser TGA
2
Ser ACT
5
Ser GCT
5
Arg ACG
7
Arg GCG
1
Arg CCG
2
Arg TCG
8
Arg CCT
4
Arg TCT
2
Leu AAG
3
Leu CAG
1
Leu TAG
2
Leu CAA
3
Leu TAA
2
Phe AAA
6
Phe GAA
8
Asn GTT
8
Lys CTT
8
Lys TTT
6
Asp ATC
1
Asp GTC
43
Glu CTC
9
Glu TTC
7
His ATG
1
His GTG
10
Gln CTG
5
Gln TTG
4
Ile AAT
4
Ile GAT
2
Ile TAT
2
iMet CAT
4
Met CAT
3
Tyr GTA
4
Cys ACA
1
Cys GCA
3
Trp CCA
3
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 39526

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
12
GGC
 
CGC
3
TGC
10
25
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
1
GCC
18
CCC
6
TCC
7
32
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
5
GGG
 
CGG
2
TGG
3
10
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
14
GGT
1
CGT
4
TGT
3
22
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
1
CAC
3
TAC
2
13
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
4
GGA
 
CGA
4
TGA
2
ACT
5
GCT
5
 
 
 
 
20
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
7
GCG
1
CCG
2
TCG
8
 
 
 
 
CCT
4
TCT
2
24
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
3
GAG
 
CAG
2
TAG
2
 
 
 
 
CAA
5
TAA
2
14
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
7
GAA
8
 
 
 
 
15
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
8
 
 
 
 
8
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
8
TTT
6
14
 
 
 
 
AAG
0
AAA
0
0%
AspATC
1
GTC
43
 
 
 
 
44
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
9
TTC
12
21
 
 
 
 
GAG
0
GAA
0
0%
HisATG
1
GTG
13
 
 
 
 
14
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
5
TTG
4
9
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
12
GAT
2
 
 
TAT
2
16
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
6/4
 
 
10
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
6
 
 
 
 
6
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
28
GCA
3
 
 
 
 
31
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
3
 
 
3
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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