tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 83
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 2
Predicted pseudogenes 8
Total tRNAs 93
Intron Summary (tRNAs with introns: 64)
Ala AGC
3
Ala CGC
1
Ala TGC
2
Gly GCC
2
Gly CCC
1
Pro AGG
2
Pro TGG
1
Thr AGT
2
Thr CGT
2
Val AAC
3
Val CAC
1
Val TAC
1
Ser CGA
1
Ser TGA
1
Arg ACG
1
Arg TCG
1
Arg TCT
1
Leu AAG
2
Leu TAG
1
Leu TAA
1
Phe GAA
2
Asn GTT
3
Lys CTT
3
Asp GTC
4
Glu CTC
4
Glu TTC
2
Gln CTG
3
Gln TTG
1
Ile AAT
3
Ile TAT
1
Met CAT
2
Tyr GTA
2
Cys GCA
2
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 12609
Number of Codons: 6084637

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
3
GGC
 
CGC
1
TGC
3
7
GCT
1.79
GCC
2.15
GCG
1.68
GCA
2.13
7.75%
GlyACC
 
GCC
4
CCC
1
TCC
2
7
GGT
1.37
GGC
2.02
GGG
1.15
GGA
1.54
6.08%
ProAGG
2
GGG
 
CGG
 
TGG
1
3
CCT
1.63
CCC
1.8
CCG
1.4
CCA
2.13
6.96%
ThrAGT
2
GGT
 
CGT
2
TGT
2
6
ACT
1.34
ACC
1.79
ACG
1.52
ACA
1.85
6.5%
ValAAC
3
GAC
 
CAC
1
TAC
2
6
GTT
1.1
GTC
1.73
GTG
1.43
GTA
0.98
5.24%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
2
GGA
 
CGA
1
TGA
1
ACT
 
GCT
 
 
 
 
 
4
TCT
1.6
TCC
1.68
TCG
1.64
TCA
1.72
AGT
1.17
AGC
1.77
 
 
 
 
9.58%
ArgACG
1
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
2
TCT
2
7
CGT
1.14
CGC
1.86
CGG
1.14
CGA
1.64
 
 
 
 
AGG
1.39
AGA
1.57
8.74%
LeuAAG
2
GAG
 
CAG
 
TAG
1
 
 
 
 
CAA
 
TAA
1
4
CTT
1.5
CTC
2.13
CTG
1.82
CTA
1.02
 
 
 
 
TTG
1.62
TTA
0.55
8.64%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
1.27
TTC
1.73
 
 
 
 
3%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
1.26
AAC
1.68
 
 
 
 
2.94%
Lys 
 
 
 
CTT
3
TTT
2
5
 
 
 
 
AAG
2.36
AAA
1.52
3.88%
AspATC
 
GTC
5
 
 
 
 
5
GAT
1.81
GAC
2.11
 
 
 
 
3.92%
Glu 
 
 
 
CTC
4
TTC
3
7
 
 
 
 
GAG
2.25
GAA
1.97
4.22%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.67
CAC
1.75
 
 
 
 
3.42%
Gln 
 
 
 
CTG
3
TTG
1
4
 
 
 
 
CAG
2.03
CAA
2.25
4.28%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
3
GAT
1
 
 
TAT
1
5
ATT
1.27
ATC
1.85
 
 
ATA
0.85
3.97%
iMet/Met 
 
 
 
CAT
2/5
 
 
7
 
 
 
 
ATG
2.02
 
 
2.02%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
0.9
TAC
1.42
 
 
 
 
2.32%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
1.12
TAG
0.51
TAA
0.42
2.05%
CysACA
 
GCA
2
 
 
 
 
2
TGT
1.1
TGC
1.5
 
 
 
 
2.6%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
1.76
 
 
1.76%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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