tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 14:49:38 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1338
Seqs w/at least 1 hit:  134
Bases read:             34312868 (x2 for both strands)
Bases in tRNAs:         16686
tRNAs predicted:        208
Av. tRNA length:        80
Script CPU time:        5.65 s
Scan CPU time:          321.04 s
Scan speed:             213.8 Kbp/sec

First pass search(es) ended: Wed Aug 23 14:57:39 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     208
Infernal-confirmed tRNAs:     206
Bases scanned by Infernal:  20835
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.94 s
Infernal CPU time:            192.52 s
Scan speed:               108.2 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 15:02:55 PDT 2017

Overall scan speed: 131429.2 bp/sec