tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 04:41:44 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         28
Seqs w/at least 1 hit:  15
Bases read:             15547272 (x2 for both strands)
Bases in tRNAs:         9881
tRNAs predicted:        122
Av. tRNA length:        80
Script CPU time:        1.67 s
Scan CPU time:          56.90 s
Scan speed:             546.5 Kbp/sec

First pass search(es) ended: Sun Aug 20 04:42:00 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     122
Infernal-confirmed tRNAs:     122
Bases scanned by Infernal:  12321
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.18 s
Infernal CPU time:            86.39 s
Scan speed:               142.6 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 04:43:51 PDT 2017

Overall scan speed: 212772.3 bp/sec