tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 03:32:35 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         123
Seqs w/at least 1 hit:  40
Bases read:             45096509 (x2 for both strands)
Bases in tRNAs:         27882
tRNAs predicted:        331
Av. tRNA length:        84
Script CPU time:        4.88 s
Scan CPU time:          221.90 s
Scan speed:             406.5 Kbp/sec

First pass search(es) ended: Tue Aug 22 03:33:41 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     331
Infernal-confirmed tRNAs:     330
Bases scanned by Infernal:  34495
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.10 s
Infernal CPU time:            228.05 s
Scan speed:               151.3 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 03:38:19 PDT 2017

Overall scan speed: 196958.1 bp/sec