tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 209
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 120
Total tRNAs 330
Intron Summary (tRNAs with introns: 159)
Ala AGC
9
Ala CGC
2
Ala TGC
3
Gly GCC
13
Gly CCC
3
Gly TCC
3
Pro AGG
6
Pro CGG
2
Pro TGG
2
Thr AGT
4
Thr CGT
2
Thr TGT
2
Val AAC
7
Val CAC
2
Val TAC
1
Ser AGA
4
Ser CGA
3
Ser TGA
2
Ser GCT
4
Arg ACG
7
Arg TCG
2
Arg CCT
3
Arg TCT
1
Leu AAG
7
Leu CAG
4
Leu CAA
2
Leu TAA
1
Phe GAA
7
Asn GTT
6
Lys CTT
6
Glu CTC
9
Glu TTC
1
Gln CTG
6
Gln TTG
2
Ile AAT
8
Ile TAT
1
Met CAT
4
Tyr GTA
5
Cys GCA
3
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 7872

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
9
GGC
 
CGC
2
TGC
4
15
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
13
CCC
3
TCC
4
20
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
6
GGG
 
CGG
2
TGG
2
10
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
6
GGT
1
CGT
2
TGT
2
11
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
 
CAC
2
TAC
2
11
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
4
GGA
 
CGA
3
TGA
2
ACT
 
GCT
4
 
 
 
 
13
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
7
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
3
TCT
3
17
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
7
GAG
 
CAG
4
TAG
1
 
 
 
 
CAA
2
TAA
2
16
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
8
 
 
 
 
8
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
127
 
 
 
 
127
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
9
TTT
3
12
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
12
 
 
 
 
12
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
9
TTC
4
13
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
5
 
 
 
 
5
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
6
TTG
2
8
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
8
GAT
 
 
 
TAT
1
9
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
4/5
 
 
9
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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