tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 164
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 14
Total tRNAs 180
Intron Summary (tRNAs with introns: 97)
Ala AGC
2
Ala CGC
3
Ala TGC
1
Gly CCC
5
Pro AGG
6
Pro CGG
5
Pro TGG
1
Thr AGT
3
Thr CGT
1
Thr TGT
1
Val AAC
2
Val TAC
1
Ser CGA
3
Ser GCT
4
Arg CCG
1
Arg TCG
2
Arg CCT
3
Arg TCT
2
Leu AAG
4
Leu CAG
2
Leu CAA
1
Leu TAA
1
Phe GAA
4
Asn GTT
4
Lys CTT
5
Lys TTT
1
Asp GTC
5
Glu CTC
4
Gln CTG
4
Gln TTG
2
Ile AAT
1
Ile TAT
1
iMet CAT
3
Met CAT
3
Tyr GTA
4
Cys GCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 13184

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
6
GGC
 
CGC
3
TGC
2
11
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
10
CCC
5
TCC
4
19
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
6
GGG
 
CGG
5
TGG
1
12
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
2
TGT
2
7
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
9
GAC
1
CAC
4
TAC
2
16
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
3
GGA
 
CGA
3
TGA
 
ACT
 
GCT
4
 
 
 
 
10
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
7
GCG
 
CCG
4
TCG
2
 
 
 
 
CCT
3
TCT
2
18
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
4
GAG
 
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
1
9
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
5
 
 
 
 
5
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
5
 
 
 
 
5
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
8
TTT
3
11
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
7
 
 
 
 
7
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
9
TTC
2
11
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
3
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
4
TTG
3
7
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
6
GAT
 
 
 
TAT
1
7
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
3/5
 
 
8
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
4
 
 
 
 
4
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
4
 
 
 
 
4
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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