tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 04:13:41 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         89
Seqs w/at least 1 hit:  36
Bases read:             51949877 (x2 for both strands)
Bases in tRNAs:         13403
tRNAs predicted:        137
Av. tRNA length:        97
Script CPU time:        5.31 s
Scan CPU time:          204.45 s
Scan speed:             508.2 Kbp/sec

First pass search(es) ended: Tue Aug 22 04:14:37 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     137
Infernal-confirmed tRNAs:     126
Bases scanned by Infernal:  16143
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.75 s
Infernal CPU time:            106.58 s
Scan speed:               151.5 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 04:16:55 PDT 2017

Overall scan speed: 326636.3 bp/sec