tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 120
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 6
Total tRNAs 126
Intron Summary (tRNAs with introns: 110)
Ala AGC
5
Ala CGC
2
Gly GCC
7
Gly CCC
2
Gly TCC
4
Pro AGG
4
Pro CGG
2
Pro TGG
2
Thr AGT
2
Thr CGT
2
Thr TGT
2
Val AAC
5
Val CAC
2
Val TAC
1
Ser AGA
1
Ser CGA
2
Ser TGA
1
Ser GCT
3
Arg ACG
4
Arg CCG
1
Arg TCG
3
Arg TCT
2
Leu AAG
4
Leu CAG
1
Leu TAG
1
Leu CAA
1
Leu TAA
1
Phe GAA
3
Asn GTT
4
Lys CTT
5
Lys TTT
2
Asp GTC
5
Glu CTC
5
Glu TTC
1
His GTG
2
Gln CTG
2
Gln TTG
2
Ile AAT
2
Ile TAT
1
Met CAT
3
Tyr GTA
1
Cys GCA
2
Trp CCA
3
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 5197

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
5
GGC
 
CGC
2
TGC
2
9
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
7
CCC
2
TCC
4
13
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
4
GGG
 
CGG
2
TGG
2
8
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
2
TGT
2
7
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
5
GAC
 
CAC
2
TAC
1
8
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
4
GGA
 
CGA
2
TGA
2
ACT
 
GCT
3
 
 
 
 
11
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
4
GCG
 
CCG
1
TCG
3
 
 
 
 
CCT
1
TCT
2
11
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
4
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
8
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
5
TTT
2
7
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
5
 
 
 
 
5
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
5
TTC
1
6
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
2
 
 
 
 
2
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
4
GAT
 
 
 
TAT
1
5
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
5/3
 
 
8
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
3
 
 
3
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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