tRNA Gene Summary

Overview
High confidence set 450
tRNAs decoding standard 20 AA 449
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 11
Unexpected anticodons 2
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 24510
Secondary filter (low feature scores, possible rep. element) 589
Tertiary filter (excessive isotype copies, possible rep. element) 2

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 27)
Arg TCT
5
Leu CAA
4
Ile TAT
5
Tyr GTA
13
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
14
GGC
 
CGC
5
TGC
8
27
GlyACC
 
GCC
23
CCC
8
TCC
10
41
ProAGG
11
GGG
 
CGG
3
TGG
8
22
ThrAGT
12
GGT
 
CGT
3
TGT
7
22
ValAAC
9
GAC
 
CAC
8
TAC
5
22
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
 
CGA
3
TGA
5
ACT
 
GCT
8
 
 
 
 
27
ArgACG
5
GCG
 
CCG
4
TCG
5
 
 
 
 
CCT
5
TCT
6
25
LeuAAG
8
GAG
 
CAG
11
TAG
5
 
 
 
 
CAA
4
TAA
2
30
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
12
 
 
 
 
12
AsnATT
 
GTT
13
 
 
 
 
13
Lys 
 
 
 
CTT
18
TTT
13
31
AspATC
 
GTC
20
 
 
 
 
20
Glu 
 
 
 
CTC
12
TTC
14
26
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
10
TTG
5
15
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
13
GAT
 
CAT
 
TAT
5
18
iMet/Met 
 
 
 
CAT
12/12
 
 
24
TyrATA
 
GTA
13
 
 
 
 
13
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
46
 
 
 
 
46
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
1
1