tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Thu Aug 24 22:29:51 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         462
Seqs w/at least 1 hit:  79
Bases read:             101129028 (x2 for both strands)
Bases in tRNAs:         23567
tRNAs predicted:        262
Av. tRNA length:        89
Script CPU time:        11.24 s
Scan CPU time:          438.94 s
Scan speed:             460.8 Kbp/sec

First pass search(es) ended: Thu Aug 24 22:33:30 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     262
Infernal-confirmed tRNAs:     250
Bases scanned by Infernal:  28807
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.47 s
Infernal CPU time:            210.82 s
Scan speed:               136.6 bp/sec

Infernal analysis of tRNAs ended: Thu Aug 24 22:37:57 PDT 2017

Overall scan speed: 304390.0 bp/sec