tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 219
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 29
Total tRNAs 250
Intron Summary (tRNAs with introns: 206)
Ala AGC
12
Ala CGC
2
Ala TGC
5
Gly ACC
1
Gly GCC
8
Gly CCC
1
Gly TCC
6
Pro AGG
4
Pro CGG
2
Pro TGG
5
Thr AGT
10
Thr CGT
2
Thr TGT
3
Val AAC
7
Val CAC
2
Val TAC
4
Ser AGA
6
Ser CGA
4
Ser TGA
4
Ser ACT
1
Ser GCT
2
Arg ACG
3
Arg GCG
1
Arg CCG
1
Arg TCG
5
Arg CCT
3
Arg TCT
3
Leu AAG
6
Leu CAG
1
Leu TAG
2
Leu CAA
5
Leu TAA
5
Phe GAA
6
Asn GTT
7
Lys CTT
8
Lys TTT
5
Glu CTC
3
Glu TTC
7
His GTG
3
Gln CTG
2
Gln TTG
5
Ile AAT
10
Ile TAT
2
iMet CAT
6
Met CAT
3
Tyr GTA
5
Cys GCA
4
Trp CCA
4

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 26649

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
13
GGC
 
CGC
2
TGC
5
20
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
1
GCC
11
CCC
1
TCC
7
20
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
4
GGG
 
CGG
2
TGG
6
12
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
11
GGT
1
CGT
2
TGT
3
17
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
 
CAC
2
TAC
4
13
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
11
GGA
5
CGA
4
TGA
4
ACT
1
GCT
4
 
 
 
 
29
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
4
GCG
1
CCG
1
TCG
6
 
 
 
 
CCT
3
TCT
3
18
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
6
GAG
 
CAG
1
TAG
2
 
 
 
 
CAA
5
TAA
5
19
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
6
 
 
 
 
6
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
7
 
 
 
 
7
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
8
TTT
6
14
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
11
 
 
 
 
11
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
5
TTC
7
12
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
3
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
2
TTG
5
7
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
10
GAT
 
 
 
TAT
2
12
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
6/3
 
 
9
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
7
 
 
 
 
7
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
4
 
 
 
 
4
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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