tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 04:17:08 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         241
Seqs w/at least 1 hit:  73
Bases read:             39422329 (x2 for both strands)
Bases in tRNAs:         11668
tRNAs predicted:        132
Av. tRNA length:        88
Script CPU time:        5.21 s
Scan CPU time:          178.06 s
Scan speed:             442.8 Kbp/sec

First pass search(es) ended: Tue Aug 22 04:19:29 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     132
Infernal-confirmed tRNAs:     129
Bases scanned by Infernal:  14308
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.56 s
Infernal CPU time:            125.05 s
Scan speed:               114.4 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 04:22:29 PDT 2017

Overall scan speed: 253617.7 bp/sec