tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 04:22:39 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1193
Seqs w/at least 1 hit:  93
Bases read:             38088637 (x2 for both strands)
Bases in tRNAs:         12225
tRNAs predicted:        140
Av. tRNA length:        87
Script CPU time:        7.05 s
Scan CPU time:          320.59 s
Scan speed:             237.6 Kbp/sec

First pass search(es) ended: Tue Aug 22 04:30:31 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     140
Infernal-confirmed tRNAs:     140
Bases scanned by Infernal:  15025
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.96 s
Infernal CPU time:            141.71 s
Scan speed:               106.0 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 04:34:02 PDT 2017

Overall scan speed: 161286.6 bp/sec