tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Sun Dec 31 12:46:57 PST 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           vert
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         231286
Seqs w/at least 1 hit:  160
Bases read:             1128339136 (x2 for both strands)
Bases in tRNAs:         31094
tRNAs predicted:        411
Av. tRNA length:        75
Script CPU time:        395.34 s
Scan CPU time:          35175.86 s
Scan speed:             64.2 Kbp/sec

First pass search(es) ended: Mon Jan  1 06:36:23 PST 2018

Infernal Stats:
-----------
Candidate tRNAs read:     411
Infernal-confirmed tRNAs:     384
Bases scanned by Infernal:  39180
% seq scanned by Infernal:  0.0 %
Script CPU time:          6.26 s
Infernal CPU time:            327.47 s
Scan speed:               119.6 bp/sec

Infernal analysis of tRNAs ended: Mon Jan  1 06:45:07 PST 2018

Overall scan speed: 62851.5 bp/sec