tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Wed Jan 16 19:49:45 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         7677
Seqs w/at least 1 hit:  39
Bases read:             2487392024 (x2 for both strands)
Bases in tRNAs:         61447
tRNAs predicted:        757
Av. tRNA length:        81
Script CPU time:        263.62 s
Scan CPU time:          15571.74 s
Scan speed:             319.5 Kbp/sec

First pass search(es) ended: Wed Jan 16 20:42:23 PST 2019

Infernal Stats:
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Candidate tRNAs read:     757
Infernal-confirmed tRNAs:     465
Bases scanned by Infernal:  76587
% seq scanned by Infernal:  0.0 %
Script CPU time:          5.31 s
Infernal CPU time:            427.06 s
Scan speed:               179.3 bp/sec

Infernal analysis of tRNAs ended: Wed Jan 16 20:52:18 PST 2019

Overall scan speed: 305806.9 bp/sec