tRNA Gene Summary

Overview
High confidence set 401
tRNAs decoding standard 20 AA 400
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 5
Unexpected anticodons 2
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 36415
Secondary filter (low feature scores, possible rep. element) 4087
Tertiary filter (excessive isotype copies, possible rep. element) 2

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 526)
Ala AGC
35
Ala GGC
17
Ala CGC
1
Ala TGC
3
Gly ACC
4
Gly GCC
2
Gly CCC
4
Gly TCC
21
Pro AGG
4
Pro GGG
6
Pro TGG
1
Thr AGT
13
Thr GGT
1
Thr CGT
5
Thr TGT
3
Val AAC
9
Val GAC
9
Val CAC
5
Val TAC
5
Ser AGA
78
Ser GGA
3
Ser CGA
1
Ser TGA
4
Ser ACT
9
Ser GCT
75
Arg CCT
3
Arg TCT
12
Leu AAG
9
Leu GAG
3
Leu CAG
4
Leu TAG
2
Leu CAA
6
Leu TAA
1
Phe AAA
7
Phe GAA
4
Asn ATT
5
Asn GTT
13
Lys CTT
62
Lys TTT
6
Asp ATC
3
Glu CTC
4
Glu TTC
2
His ATG
1
His GTG
4
Gln CTG
4
Ile AAT
4
Ile GAT
5
Ile TAT
5
Met CAT
3
Tyr ATA
3
Tyr GTA
12
Supres TCA
2
Supres CTA
2
Supres TTA
2
Cys ACA
6
Cys GCA
7
Trp CCA
2
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
1628
GGC
257
CGC
41
TGC
225
2151
GlyACC
117
GCC
369
CCC
39
TCC
102
627
ProAGG
76
GGG
20
CGG
8
TGG
23
127
ThrAGT
261
GGT
178
CGT
28
TGT
75
542
ValAAC
214
GAC
58
CAC
95
TAC
43
410
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
180
GGA
28
CGA
38
TGA
60
ACT
961
GCT
24388
 
 
 
 
25655
ArgACG
10
GCG
37
CCG
3
TCG
7
 
 
 
 
CCT
194
TCT
408
659
LeuAAG
26
GAG
12
CAG
30
TAG
22
 
 
 
 
CAA
1911
TAA
27
2028
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
21
GAA
22
 
 
 
 
43
AsnATT
192
GTT
2509
 
 
 
 
2701
Lys 
 
 
 
CTT
243
TTT
90
333
AspATC
63
GTC
70
 
 
 
 
133
Glu 
 
 
 
CTC
115
TTC
74
189
HisATG
5
GTG
47
 
 
 
 
52
Gln 
 
 
 
CTG
28
TTG
19
47
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
78
GAT
327
CAT
 
TAT
25
430
iMet/Met 
 
 
 
CAT
11/50
 
 
61
TyrATA
12
GTA
32
 
 
 
 
44
Supres 
 
TCA
14
CTA
11
TTA
8
33
CysACA
29
GCA
226
 
 
 
 
255
Trp 
 
 
 
CCA
33
 
 
33
SelCys 
 
 
 
 
 
TCA
1
1