tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 468
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA) 1
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 471
Intron Summary (tRNAs with introns: 25)
Ser AGA
2
Arg TCT
5
Leu CAA
4
Ile TAT
4
Tyr GTA
10

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 53036
Number of Codons: 24533776

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
23
GGC
4
CGC
10
TGC
11
48
GCT
2
GCC
2.6
GCG
0.64
GCA
1.58
6.82%
GlyACC
2
GCC
15
CCC
7
TCC
8
32
GGT
1.14
GGC
2.12
GGG
1.52
GGA
1.68
6.46%
ProAGG
8
GGG
1
CGG
3
TGG
8
20
CCT
1.84
CCC
1.82
CCG
0.62
CCA
1.73
6.01%
ThrAGT
11
GGT
 
CGT
4
TGT
4
19
ACT
1.37
ACC
1.9
ACG
0.56
ACA
1.6
5.43%
ValAAC
8
GAC
1
CAC
12
TAC
3
24
GTT
1.07
GTC
1.54
GTG
2.84
GTA
0.74
6.19%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
1
CGA
3
TGA
3
ACT
 
GCT
8
 
 
 
 
25
TCT
1.62
TCC
1.81
TCG
0.42
TCA
1.18
AGT
1.27
AGC
1.97
 
 
 
 
8.27%
ArgACG
6
GCG
 
CCG
3
TCG
5
 
 
 
 
CCT
5
TCT
6
25
CGT
0.47
CGC
0.94
CGG
1.02
CGA
0.66
 
 
 
 
AGG
1.22
AGA
1.21
5.52%
LeuAAG
5
GAG
 
CAG
10
TAG
4
 
 
 
 
CAA
4
TAA
7
30
CTT
1.34
CTC
2.02
CTG
3.95
CTA
0.81
 
 
 
 
TTG
1.34
TTA
0.67
10.13%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
7
 
 
 
 
7
TTT
1.72
TTC
2.18
 
 
 
 
3.9%
AsnATT
 
GTT
13
 
 
 
 
13
AAT
1.56
AAC
2.03
 
 
 
 
3.59%
Lys 
 
 
 
CTT
26
TTT
14
40
 
 
 
 
AAG
3.36
AAA
2.19
5.55%
AspATC
 
GTC
16
 
 
 
 
16
GAT
2.1
GAC
2.6
 
 
 
 
4.7%
Glu 
 
 
 
CTC
14
TTC
8
22
 
 
 
 
GAG
3.94
GAA
2.7
6.64%
HisATG
1
GTG
10
 
 
 
 
11
CAT
1.06
CAC
1.53
 
 
 
 
2.59%
Gln 
 
 
 
CTG
12
TTG
7
19
 
 
 
 
CAG
3.41
CAA
1.2
4.61%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
12
GAT
1
 
 
TAT
5
18
ATT
1.54
ATC
2.25
 
 
ATA
0.74
4.53%
Met 
 
 
 
CAT
19
 
 
19
 
 
 
 
ATG
2.28
 
 
2.28%
TyrATA
 
GTA
11
 
 
 
 
11
TAT
1.22
TAC
1.61
 
 
 
 
2.83%
Supres 
 
 
 
CTA
 
TTA
1
1
Stop 
 
 
 
TAG
0.08
TAA
0.1
0.18%
CysACA
1
GCA
60
 
 
 
 
61
TGT
1.14
TGC
1.23
 
 
 
 
2.37%
Trp 
 
 
 
CCA
8
 
 
8
 
 
 
 
TGG
1.25
 
 
1.25%
SelCys 
 
 
 
 
 
TCA
1
1
Stop 
 
 
 
 
 
TGA
0.16
0.16%