tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 105
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 4
Predicted pseudogenes 11
Total tRNAs 120
Intron Summary (tRNAs with introns: 63)
Ala AGC
1
Ala CGC
1
Gly TCC
5
Pro AGG
4
Pro CGG
1
Pro TGG
1
Thr AGT
2
Thr TGT
1
Val CAC
1
Val TAC
1
Ser AGA
4
Ser CGA
1
Ser TGA
1
Ser GCT
1
Arg ACG
1
Arg CCG
1
Arg TCG
3
Leu AAG
5
Leu CAG
1
Leu CAA
1
Leu TAA
1
Phe AAA
1
Asn GTT
1
Lys CTT
5
Asp GTC
4
Glu CTC
3
Glu TTC
1
His GTG
1
Gln CTG
3
Ile TAT
1
Met CAT
2
Tyr GTA
3

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 46539

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
5
GGC
 
CGC
1
TGC
2
8
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
1
CCC
1
TCC
5
7
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
4
GGG
 
CGG
1
TGG
2
7
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
5
GGT
 
CGT
 
TGT
2
7
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
3
GAC
 
CAC
1
TAC
2
6
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
4
GGA
 
CGA
2
TGA
2
ACT
 
GCT
1
 
 
 
 
9
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
1
GCG
 
CCG
1
TCG
4
 
 
 
 
CCT
2
TCT
1
9
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
5
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
2
TAA
1
10
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
1
GAA
5
 
 
 
 
6
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
5
TTT
1
6
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
5
 
 
 
 
5
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
6
TTC
1
7
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
2
 
 
 
 
2
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
3
TTG
1
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
6
GAT
 
 
 
TAT
1
7
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
-/4
 
 
0
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
4
 
 
 
 
4
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-