tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Wed Jan 10 17:21:31 PST 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1949
Seqs w/at least 1 hit:  65
Bases read:             411831487 (x2 for both strands)
Bases in tRNAs:         136230
tRNAs predicted:        1859
Av. tRNA length:        73
Script CPU time:        48.20 s
Scan CPU time:          2483.85 s
Scan speed:             331.6 Kbp/sec

First pass search(es) ended: Wed Jan 10 17:36:52 PST 2018

Infernal Stats:
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Candidate tRNAs read:     1859
Infernal-confirmed tRNAs:     1018
Bases scanned by Infernal:  173402
% seq scanned by Infernal:  0.0 %
Script CPU time:          8.90 s
Infernal CPU time:            714.52 s
Scan speed:               242.7 bp/sec

Infernal analysis of tRNAs ended: Wed Jan 10 17:56:06 PST 2018

Overall scan speed: 253008.9 bp/sec