tRNA Gene Summary

Overview
High confidence set 693
tRNAs decoding standard 20 AA 693
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 15
Unexpected anticodons 7
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 168
Secondary filter (low feature scores, possible rep. element) 132
Tertiary filter (excessive isotype copies, possible rep. element) 3

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 34)
Met CAT
19
Tyr GTA
15

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 22674
Number of Codons: 5728832

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
25
GGC
 
CGC
6
TGC
21
52
GCT
2.48
GCC
0.82
GCG
0.46
GCA
1.96
5.72%
GlyACC
 
GCC
29
CCC
6
TCC
21
56
GGT
2.21
GGC
0.79
GGG
0.95
GGA
2.1
6.05%
ProAGG
14
GGG
 
CGG
3
TGG
23
40
CCT
1.8
CCC
0.55
CCG
0.46
CCA
1.69
4.5%
ThrAGT
15
GGT
 
CGT
3
TGT
13
31
ACT
1.85
ACC
0.98
ACG
0.42
ACA
1.79
5.04%
ValAAC
21
GAC
 
CAC
10
TAC
10
41
GTT
2.95
GTC
0.9
GTG
1.63
GTA
1.07
6.55%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
17
GGA
 
CGA
3
TGA
12
ACT
 
GCT
21
 
 
 
 
53
TCT
2.35
TCC
1.02
TCG
0.55
TCA
2.12
AGT
1.58
AGC
0.86
 
 
 
 
8.48%
ArgACG
11
GCG
 
CCG
4
TCG
7
 
 
 
 
CCT
9
TCT
11
42
CGT
0.76
CGC
0.37
CGG
0.36
CGA
0.53
 
 
 
 
AGG
1.21
AGA
1.77
5%
LeuAAG
14
GAG
 
CAG
3
TAG
10
 
 
 
 
CAA
18
TAA
10
55
CTT
2.52
CTC
1.11
CTG
0.84
CTA
1.02
 
 
 
 
TTG
2.59
TTA
1.6
9.68%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
22
 
 
 
 
22
TTT
2.92
TTC
1.65
 
 
 
 
4.57%
AsnATT
 
GTT
31
 
 
 
 
31
AAT
3.22
AAC
1.79
 
 
 
 
5.01%
Lys 
 
 
 
CTT
20
TTT
24
44
 
 
 
 
AAG
2.97
AAA
3.55
6.52%
AspATC
 
GTC
35
 
 
 
 
35
GAT
3.82
GAC
1.43
 
 
 
 
5.25%
Glu 
 
 
 
CTC
17
TTC
15
32
 
 
 
 
GAG
2.51
GAA
3.65
6.16%
HisATG
 
GTG
14
 
 
 
 
14
CAT
1.76
CAC
0.83
 
 
 
 
2.59%
Gln 
 
 
 
CTG
10
TTG
12
22
 
 
 
 
CAG
1.22
CAA
2.37
3.59%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
26
GAT
 
CAT
 
TAT
9
35
ATT
2.94
ATC
1.37
 
 
ATA
1.55
5.86%
iMet/Met 
 
 
 
CAT
20/19
 
 
39
 
 
 
 
ATG
2.61
 
 
2.61%
TyrATA
 
GTA
18
 
 
 
 
18
TAT
1.92
TAC
1.02
 
 
 
 
2.94%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.15
TAG
0.1
TAA
0.14
0.39%
CysACA
 
GCA
17
 
 
 
 
17
TGT
1.3
TGC
0.72
 
 
 
 
2.02%
Trp 
 
 
 
CCA
14
 
 
14
 
 
 
 
TGG
1.46
 
 
1.46%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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