tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 00:09:31 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         470
Seqs w/at least 1 hit:  124
Bases read:             36348485 (x2 for both strands)
Bases in tRNAs:         13176
tRNAs predicted:        177
Av. tRNA length:        74
Script CPU time:        5.75 s
Scan CPU time:          179.79 s
Scan speed:             404.3 Kbp/sec

First pass search(es) ended: Fri Aug 25 00:13:11 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     177
Infernal-confirmed tRNAs:     175
Bases scanned by Infernal:  16706
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.58 s
Infernal CPU time:            170.57 s
Scan speed:               97.9 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 00:17:26 PDT 2017

Overall scan speed: 202110.1 bp/sec