tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 05:09:50 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         642
Seqs w/at least 1 hit:  73
Bases read:             26598149 (x2 for both strands)
Bases in tRNAs:         11582
tRNAs predicted:        103
Av. tRNA length:        112
Script CPU time:        4.52 s
Scan CPU time:          197.62 s
Scan speed:             269.2 Kbp/sec

First pass search(es) ended: Tue Aug 22 05:14:16 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     103
Infernal-confirmed tRNAs:     86
Bases scanned by Infernal:  13642
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.17 s
Infernal CPU time:            119.44 s
Scan speed:               114.2 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 05:16:59 PDT 2017

Overall scan speed: 164312.9 bp/sec