tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 05:17:08 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         209
Seqs w/at least 1 hit:  50
Bases read:             51286497 (x2 for both strands)
Bases in tRNAs:         26512
tRNAs predicted:        294
Av. tRNA length:        90
Script CPU time:        5.71 s
Scan CPU time:          257.66 s
Scan speed:             398.1 Kbp/sec

First pass search(es) ended: Tue Aug 22 05:19:03 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     294
Infernal-confirmed tRNAs:     292
Bases scanned by Infernal:  32392
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.09 s
Infernal CPU time:            230.53 s
Scan speed:               140.5 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 05:23:36 PDT 2017

Overall scan speed: 206388.4 bp/sec