tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 277
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 2
tRNAs with undetermined or unknown isotypes 5
Predicted pseudogenes 8
Total tRNAs 292
Intron Summary (tRNAs with introns: 191)
Ala AGC
13
Ala CGC
2
Ala TGC
2
Gly GCC
17
Gly TCC
1
Pro AGG
9
Pro TGG
2
Thr AGT
3
Val CAC
1
Val TAC
1
Ser CGA
1
Ser TGA
1
Ser GCT
6
Arg TCG
6
Arg TCT
1
Leu AAG
12
Leu CAG
4
Leu TAG
2
Leu CAA
2
Phe GAA
8
Asn ATT
1
Asn GTT
7
Lys CTT
18
Lys TTT
1
Asp GTC
3
Glu CTC
17
Glu TTC
1
His GTG
14
Gln TTG
3
Ile AAT
12
Ile TAT
1
Met CAT
5
Tyr GTA
10
Supres TCA
2
Cys GCA
1
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 11570

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
13
GGC
 
CGC
3
TGC
2
18
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
17
CCC
1
TCC
2
20
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
9
GGG
 
CGG
 
TGG
2
11
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
10
GGT
 
CGT
2
TGT
3
15
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
15
GAC
5
CAC
2
TAC
1
23
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
9
GGA
 
CGA
2
TGA
1
ACT
 
GCT
6
 
 
 
 
18
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
9
GCG
 
CCG
2
TCG
6
 
 
 
 
CCT
2
TCT
1
20
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
12
GAG
 
CAG
4
TAG
2
 
 
 
 
CAA
2
TAA
3
23
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
8
 
 
 
 
8
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
1
GTT
8
 
 
 
 
9
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
18
TTT
2
20
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
13
 
 
 
 
13
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
17
TTC
3
20
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
14
 
 
 
 
14
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
9
TTG
3
12
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
12
GAT
 
 
 
TAT
1
13
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
2/7
 
 
9
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
10
 
 
 
 
10
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
2
CTA
 
TTA
 
2
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
6
 
 
 
 
6
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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