Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGGACTAGCTCAGAGGTA.GAGCGCTCGCTTAGCATGCGAGAG...........GtGCCGGGATCGATACCCGGGTTCTCCA tRNA-Ala-AGC-1-1 Sc: 63.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGAATTAGCTCAGTGGTA.GAGCGTGTGCTTCGCATGTACAAG...........GtCCCGAGTTCAATCCTTGGATTCTCCA tRNA-Ala-CGC-1-1 Sc: 68.4 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGGACTAGCTCAGTGGTA.GAGTGTCCGCTTTGCATGCGGAAG...........GtCGGGGGTTCGATCCCCTCGTTCTCCA tRNA-Ala-TGC-1-1 Sc: 74.6
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCCTATGGCCTAAT.GGTtA.AGGCGTCGGTCTACGGAACCGAAG...........AgTCGGGGTTCGAGTCCCTGTAGGATCA tRNA-Arg-ACG-1-1 Sc: 69.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. ACAGGCGTGGCGTAAT.GGT.A.ACGCGTCTGACTTCGGATCAGAAG...........AtTGCGGGTTCGAGTCCCGTCGCCTGTG tRNA-Arg-TCG-1-1 Sc: 71.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GTCCTCGTAGCTCAAT.GGC.A.GAGCGTTGCCTTCCTAAGGCAAAG...........GtTGCGGGTTCGAAACCCGTCGGGGACG tRNA-Arg-CCT-1-1 Sc: 70.6 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<. GTCCTGGTGGCGCAATTGGC.A.GCGCATCTGACTTCTAATCAGGAG...........GtTCTGGGTTCGAGTCCCTGTCAGGACG tRNA-Arg-TCT-1-1 Sc: 71.7 GTCCTGGTGGCGCAATTGGC.A.GCGCATCTGACTTCTAATCAGGAG...........GtTCTGGGTTCGAGTCCCTGTCAGGACG tRNA-Arg-TCT-1-2 Sc: 71.7
Asn tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCTTCCATGGCGTAGCTGGTtATCGCGTTCGGCTGTTAACCGAAAG...........GtCGTTGGTTCGAATCCGACTGGAAGCG tRNA-Asn-GTT-1-1 Sc: 85.4 GCTTCCATGGCGTAGCTGGTtATCGCGTTCGGCTGTTAACCGAAAG...........GtCGTTGGTTCGAATCCGACTGGAAGCG tRNA-Asn-GTT-1-2 Sc: 85.4
Asp tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCTCTCATGGTGTAGTGGTtA.TCATTCTCGCTTGTCACGCGGGGG...........ACCAGGGTTCGATTCCCTGTGAGAGAG tRNA-Asp-GTC-2-1 Sc: 65.5 TCTTTCATGGTGTAGTGGTtA.TCATTCTCGCTTGTCACGCGGGGG...........ACCAGGGTTCGATTCCCTGTGAGAGAG tRNA-Asp-GTC-1-1 Sc: 64.1
Cys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGCTTGTAGCTCAGTGGTA.GAGCATTCGACTGCAGATCGGATT...........GtCCCGGGTTCAAATCCCGGCGAGCCCT tRNA-Cys-GCA-1-1 Sc: 78.1
Gln tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTGTGTAGTGTAGCGGTtA.GCACCTCAGACTCTGAATCTGATA...........ACCCGAGTTCGATTCTCGGCACGACCA tRNA-Gln-CTG-1-1 Sc: 70.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTCCTATGGTGTAGCGGT.A.GCACCCGGGACTTTGAATCCCGTA...........ACCCGAGTTCGATTCTCGGTAGGACCA tRNA-Gln-TTG-1-1 Sc: 71.0
Glu tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCGCTTTGGTCCAGTGGCtA.GGATTTCGCCCTCTCACGGCGACG...........GCCGGGGTTCGATTCCCTGAAGCGGAA tRNA-Glu-CTC-1-1 Sc: 66.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCCTTGTGGTCTAGTGGCtA.GGATTTCGCGTTTTCACCGCGACG...........GCCGGGGTTCAATTCCCCGCAAGGGAA tRNA-Glu-TTC-1-1 Sc: 66.5 TCCCTTGTGGTCTAGTAGCtA.GGATTTCGCGTTTTCACCGCGACG...........GCCGGGGTTCAATTCCCCGCAAGGGAA tRNA-Glu-TTC-2-1 Sc: 59.3
Gly tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGCATGTGGTTTAATGGTA.TAATTCTCGCTTGCCATGCGAGAG...........ACCCGGGTTCGATTCCCGGCATGCGCA tRNA-Gly-GCC-1-1 Sc: 75.0 >>>>>>>..>>.>........<.<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<. GCGCTAATGGTATAATGGTA.GAACGCAACCCTTCCAAGGTTAAG...........ACCCGGGTTCGATTCCCGGTTAGCGCA tRNA-Gly-TCC-1-1 Sc: 63.3 GCGCTAATGGTATAATGGTA.GAACGCAACCCTTCCAAGGTTAAG...........ACCCGGGTTCGATTCCCGGTTAGCGCA tRNA-Gly-TCC-1-2 Sc: 63.3
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCTCCTTTAGTATAGTGGTtA.TTATGGCACGTTGTGGCCGTGCAG...........ACCTGAGTTCGATTCTCGGAGGGAGCA tRNA-His-GTG-1-1 Sc: 58.1
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>...................................................<<<<................>>>>>.......<<<<<<<<<<<<. GCTTTCATAGCTCAGTTGGTtA.GAGCATCGGACTAATA..........................................ACCCGAAG...........GcCCCAGGTTCGAGCCCTGGTGAAAGCA tRNA-Ile-AAT-1-1 Sc: 84.2 GCTTTCATAGCTCAGTTGGTtA.GAGCATCGGACTAATA..........................................ACCCGAAG...........GcCCCAGGTTCGAGCCCTGGTGAAAGCA tRNA-Ile-AAT-1-2 Sc: 84.2 >>>>>>>..>>>>..........<<<<.>>>>>.................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GCTCCCGTAGCTCAGT.GGT.A.GAGCACGGCACTTATGggtgtgagcctcctgtgtctgaaggctgtaataagctgagttATGCCGGG...........GtCGTGGGTTCGATCCCCATCGGGAGCA tRNA-Ile-TAT-1-1 Sc: 75.8
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<. GATCAGATGGCCGAGCGGTctA.AGGCGCTAGATTAAGGCTCTAGTCTCT.TC........GGAGGCGCGGGTTCGAATCCCGC.TCTGATCA tRNA-Leu-AAG-1-1 Sc: 77.1 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<. GGCAGAATGGTCGAGTGGTctA.AGACGCTAGATTCAGGTTCTAGTCCTTC.........CGAGGGCGAGGGTTCGAATCCCTC.TTCTGTCA tRNA-Leu-CAG-1-1 Sc: 71.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<. GGCAAGGTGGCCGAGCGGTccA.AGGCGCTAGGTTTAGGTCCTAGTCTTC.GTAT......GAAGGCGGGGGTTCGAATCCCCC.CCTTGTCA tRNA-Leu-TAG-1-1 Sc: 76.2 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.>.........<.<<<..>>>>>.......<<<<<.<<<<<<<. GGCATCTTGGTCGAGTGGTctA.AGACGTGGCACTCAAGATGCTATCCTTT.........ACAGGGCGTGGGTTCGAATCCCAC.AGATGTCA tRNA-Leu-CAA-1-1 Sc: 74.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<. GGTTTGATGGCCGAGCGGTctA.AGGCGTTCGACTTAAGATCGAGTCTCTC.........CGGAGGCGCGGGTTCGAATCCCGC.TCAAACCA tRNA-Leu-TAA-1-1 Sc: 79.9
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. ACCCGGTTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGG...........GcCGCGGGTTCGAGTCCCGTACTGGGTG tRNA-Lys-CTT-1-1 Sc: 82.4 ACCCGGTTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGG...........GcCGCGGGTTCGAGTCCCGTACTGGGTG tRNA-Lys-CTT-1-2 Sc: 82.4 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. ACCCGGTTAGCTCAGTCGGTAGAGCATTGGACTTTTAATCCAAGG...........GtCGCGGGTTCGAGTCCCGTATCGGGTG tRNA-Lys-TTT-1-1 Sc: 83.3 ACCCGGTTAGCTCAGTCGGTAGAGCATTGGACTTTTAATCCAAGG...........GtCGCGGGTTCGAGTCCCGTATCGGGTG tRNA-Lys-TTT-1-2 Sc: 83.3
Met tRNAs
>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<. GCGAGCTTGGCGCAGTCGGTA.GCGCGTTAGTCTCATAATCTAAAG...........GcCATGGGTTCGAATCCCATAGTTCGCA tRNA-Met-CAT-1-1 Sc: 83.2 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. AGCACTGTGGCGCAAT.GGCA.GCGCGCTGGGCTCATAACCCAGAG...........GtTGTAAGTTCGAGCCTTACCGGTGCTA tRNA-Met-CAT-2-1 Sc: 72.0
Phe tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.........<<<<<................>>>>>.......<<<<<<<<<<<<. GGTAACTTAGTTTAGT.GGCA.GAACGTCTAA..TAAAT..TTAGAAG...........G.CTTGGGTTCGATTCCTAAAGTTACTT tRNA-Phe-AAA-1-1 Sc: 37.8 >>>>>>>..>>>>.........<<<<.>>>>>.........<<<<<................>>>>>.......<<<<<<<<<<<<. GCGAGCTTAGCTCAGTTGGGA.GAGCGTTAGACTGAAGA..TCTAAAG...........GtCCTTGGTTCGAGCCCGAGAGTTCGCA tRNA-Phe-GAA-1-1 Sc: 82.6
Pro tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGGACTGGTCTAGTGGTtA.TGATTCTCGCTTAGGGTGCGGGAG...........GtGCCGGGTTCGATTCCCGGGTTCGCCC tRNA-Pro-AGG-1-1 Sc: 59.8 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGGCTTGGTCTAGTGGT.A.TGATTTGTGCTTCGGGTGCACGAG...........GtGCCGGGTTCGATTCCCGGAGCCACCC tRNA-Pro-CGG-1-1 Sc: 66.5 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCGACTTGGTCTAGTGGT.A.TGATTCCTGCTTTGGGTGCAGGAG...........GtCCCGGGTTCAATTCCCGGAGTTGCCC tRNA-Pro-TGG-1-1 Sc: 71.7
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<. GTCGATATGGCCGAGTGGTtA.AGGCGATTGATTAGAAATCAATT.GGGC.TT........GCCCG.CGCAGGTTCGAATCCTGC.TGTCGACG tRNA-Ser-AGA-1-1 Sc: 86.8 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.........<<<<<...>>>>>.......<<<<<.<<<<<<<. GTCGATATGGCCGAGTGGTtA.AGGCGGTTGATTCGAAATCAATT.GGGCA.........TGCCCG.CGCAGGTTCAAATCCTGC.TGTCGACG tRNA-Ser-CGA-1-1 Sc: 83.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<. GTCAGTGTGGCCGAGTGGTtA.AGGCGGTTGACTTGAAATCAGCT.GGGC.TTA.......GCCCG.CGCAGGTTCGAATCCTGC.CGCTGACG tRNA-Ser-TGA-1-1 Sc: 82.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<. GGCACAGTGGCAGAATGGTtA.TTGCGACGGCTTGCTAAGCCGTGACCC..TTT........GGGTtCGTGGGTTCGATTCCCAT.CTGTGTCG tRNA-Ser-GCT-1-1 Sc: 62.2
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTTCTTAGCTCAATGGTA.GAGCGCACCCCTAGTAAGGGTGAG...........GcTACGGGTTCGATTCCCGTAGAAGCCT tRNA-Thr-AGT-1-1 Sc: 79.2 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTCTTTAGCTCAGGGGTA.GAGCGTTGCTCTCGTAAAGCAAAG...........GtCAGTGGTTCGAATCTGCTAAGAGCCT tRNA-Thr-CGT-1-1 Sc: 67.9 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCTCTTTGGTTTAGTGGTA.TAACGTCAGTCTTGTAAACTGAAG...........GtCGGCGGTTCGATTCTGTCAAGAGGCT tRNA-Thr-TGT-1-1 Sc: 71.2
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCCCGGTGGCGCAAAGGTA.GCGCTTTCGACTCCAGATCGAATG...........GtTGGGAGTTCGAGTCTCTCCTGGGTCA tRNA-Trp-CCA-1-1 Sc: 70.7
Tyr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.............................<<<<<................>>>>>.......<<<<<<<<<<<<. CTCCTGATAGCTCAGTTGGAAGAGCATACGACTGTAGaagtggaattcccattggagttATCGTAGG...........GtCGGTGGTTCGAATCCATCTCAGGAGA tRNA-Tyr-GTA-1-1 Sc: 66.4
Val tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GTGCTGTTGGTGTAGTTGGTtA.TCACATTCGCCTAACACGCGAAAG...........GtGCTCGGTTCGATTCCGGGACAGCACA tRNA-Val-AAC-1-1 Sc: 72.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCTTTCGTGGTGTAGT.GGT.A.TCACGCATCCTTCACACGGATGAG...........GcCTCCGGTTCGATCCCGGACGAAAGCA tRNA-Val-CAC-1-1 Sc: 72.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GTCGCCATAGTGTAGT.GGTtA.TCACGCATCCTTTACACGGATGAG...........GtCCCCGGTTCGATCCCGGGTGGCGACA tRNA-Val-TAC-1-1 Sc: 77.8