tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 05:23:49 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1297
Seqs w/at least 1 hit:  98
Bases read:             42592847 (x2 for both strands)
Bases in tRNAs:         14727
tRNAs predicted:        140
Av. tRNA length:        105
Script CPU time:        7.52 s
Scan CPU time:          356.25 s
Scan speed:             239.1 Kbp/sec

First pass search(es) ended: Tue Aug 22 05:32:34 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     140
Infernal-confirmed tRNAs:     129
Bases scanned by Infernal:  17527
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.93 s
Infernal CPU time:            154.71 s
Scan speed:               113.3 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 05:36:15 PDT 2017

Overall scan speed: 163375.6 bp/sec