tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 06:15:14 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         3551
Seqs w/at least 1 hit:  123
Bases read:             38595409 (x2 for both strands)
Bases in tRNAs:         15092
tRNAs predicted:        150
Av. tRNA length:        100
Script CPU time:        10.18 s
Scan CPU time:          666.81 s
Scan speed:             115.8 Kbp/sec

First pass search(es) ended: Tue Aug 22 06:34:33 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     150
Infernal-confirmed tRNAs:     129
Bases scanned by Infernal:  18084
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.25 s
Infernal CPU time:            163.68 s
Scan speed:               110.5 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 06:38:39 PDT 2017

Overall scan speed: 91467.0 bp/sec