tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 104
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 12
Predicted pseudogenes 13
Total tRNAs 129
Intron Summary (tRNAs with introns: 86)
Ala CGC
5
Ala TGC
4
Gly CCC
9
Gly TCC
1
Pro CGG
4
Pro TGG
1
Thr CGT
3
Thr TGT
3
Val CAC
2
Val TAC
2
Ser AGA
1
Ser CGA
6
Ser TGA
3
Ser GCT
2
Arg TCG
1
Arg CCT
6
Arg TCT
1
Leu CAG
4
Leu TAG
3
Leu CAA
4
Leu TAA
1
Lys TTT
2
Glu CTC
4
Glu TTC
3
His GTG
1
Gln CTG
2
Gln TTG
2
Ile GAT
1
Ile TAT
3
Tyr GTA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 227264

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
5
TGC
4
9
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
 
CCC
9
TCC
4
13
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
 
GGG
 
CGG
4
TGG
3
7
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
 
GGT
 
CGT
3
TGT
3
6
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
 
GAC
 
CAC
5
TAC
2
7
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
1
GGA
 
CGA
10
TGA
4
ACT
 
GCT
2
 
 
 
 
17
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
 
GCG
 
CCG
3
TCG
2
 
 
 
 
CCT
6
TCT
5
16
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
 
GAG
 
CAG
4
TAG
3
 
 
 
 
CAA
4
TAA
2
13
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
1
GAA
 
 
 
 
 
1
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
 
 
 
 
 
0
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
 
TTT
3
3
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
 
 
 
 
 
0
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
4
TTC
7
11
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
 
 
TAT
3
4
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
 
 
 
0
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
 
 
 
 
 
0
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
 
 
 
0
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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