tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 00:27:22 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         578
Seqs w/at least 1 hit:  57
Bases read:             26809569 (x2 for both strands)
Bases in tRNAs:         9692
tRNAs predicted:        110
Av. tRNA length:        88
Script CPU time:        3.97 s
Scan CPU time:          186.17 s
Scan speed:             288.0 Kbp/sec

First pass search(es) ended: Fri Aug 25 00:30:53 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     110
Infernal-confirmed tRNAs:     92
Bases scanned by Infernal:  11884
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.92 s
Infernal CPU time:            95.12 s
Scan speed:               124.9 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 00:33:06 PDT 2017

Overall scan speed: 186709.2 bp/sec