tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 11:49:52 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1607
Seqs w/at least 1 hit:  135
Bases read:             15689776 (x2 for both strands)
Bases in tRNAs:         13099
tRNAs predicted:        177
Av. tRNA length:        74
Script CPU time:        4.16 s
Scan CPU time:          288.16 s
Scan speed:             108.9 Kbp/sec

First pass search(es) ended: Wed Aug 23 11:58:06 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     177
Infernal-confirmed tRNAs:     165
Bases scanned by Infernal:  16639
% seq scanned by Infernal:  0.1 %
Script CPU time:          3.83 s
Infernal CPU time:            169.32 s
Scan speed:               98.3 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 12:02:28 PDT 2017

Overall scan speed: 67414.8 bp/sec