tRNA Gene Summary

Overview
High confidence set 676
tRNAs decoding standard 20 AA 674
Selenocysteine tRNAs (TCA) 2
Notable atypical predictions  
Anticodon/isotype mismatch 21
Unexpected anticodons 6
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 120339
Secondary filter (low feature scores, possible rep. element) 941
Tertiary filter (excessive isotype copies, possible rep. element) 11

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 47)
Gly CCC
1
Thr AGT
1
Arg TCT
6
Leu CAA
9
Leu TAA
1
Ile TAT
7
Tyr GTA
22
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
40
GGC
 
CGC
10
TGC
15
65
GlyACC
 
GCC
35
CCC
10
TCC
15
60
ProAGG
14
GGG
 
CGG
7
TGG
8
29
ThrAGT
15
GGT
 
CGT
11
TGT
13
39
ValAAC
20
GAC
 
CAC
9
TAC
13
42
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
16
GGA
 
CGA
4
TGA
5
ACT
 
GCT
16
 
 
 
 
41
ArgACG
11
GCG
 
CCG
14
TCG
7
 
 
 
 
CCT
6
TCT
7
45
LeuAAG
8
GAG
 
CAG
20
TAG
5
 
 
 
 
CAA
9
TAA
11
53
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
19
 
 
 
 
19
AsnATT
 
GTT
22
 
 
 
 
22
Lys 
 
 
 
CTT
19
TTT
24
43
AspATC
 
GTC
23
 
 
 
 
23
Glu 
 
 
 
CTC
21
TTC
14
35
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
16
TTG
8
24
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
19
GAT
 
CAT
 
TAT
7
26
iMet/Met 
 
 
 
CAT
21/9
 
 
30
TyrATA
 
GTA
22
 
 
 
 
22
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
35
 
 
 
 
35
Trp 
 
 
 
CCA
11
 
 
11
SelCys 
 
 
 
 
 
TCA
2
2