tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Thu Jan 17 01:09:36 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         201525
Seqs w/at least 1 hit:  49373
Bases read:             1996826513 (x2 for both strands)
Bases in tRNAs:         18110999
tRNAs predicted:        250460
Av. tRNA length:        72
Script CPU time:        612.63 s
Scan CPU time:          53780.90 s
Scan speed:             74.3 Kbp/sec

First pass search(es) ended: Thu Jan 17 20:44:43 PST 2019

Infernal Stats:
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Candidate tRNAs read:     250460
Infernal-confirmed tRNAs:     122514
Bases scanned by Infernal:  23110293
% seq scanned by Infernal:  0.6 %
Script CPU time:          1818.31 s
Infernal CPU time:            103275.65 s
Scan speed:               223.8 bp/sec

Infernal analysis of tRNAs ended: Sat Jan 19 19:06:39 PST 2019

Overall scan speed: 25040.5 bp/sec