tRNA Gene Summary

Overview
High confidence set 676
tRNAs decoding standard 20 AA 674
Selenocysteine tRNAs (TCA) 2
Notable atypical predictions  
Anticodon/isotype mismatch 21
Unexpected anticodons 6
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 120339
Secondary filter (low feature scores, possible rep. element) 941
Tertiary filter (excessive isotype copies, possible rep. element) 11

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 1300)
Ala AGC
3
Ala GGC
19
Ala TGC
3
Gly GCC
4
Gly CCC
5
Gly TCC
2
Pro AGG
57
Pro GGG
625
Pro CGG
22
Pro TGG
220
Thr AGT
12
Thr GGT
11
Thr CGT
3
Thr TGT
3
Val AAC
1
Val GAC
4
Val CAC
1
Ser AGA
6
Ser GGA
44
Ser CGA
6
Ser TGA
4
Ser GCT
4
Arg ACG
3
Arg GCG
5
Arg CCG
2
Arg TCG
5
Arg CCT
2
Arg TCT
17
Leu AAG
6
Leu GAG
35
Leu CAG
13
Leu TAG
8
Leu CAA
22
Leu TAA
4
Phe AAA
1
Phe GAA
8
Asn GTT
3
Lys CTT
3
Lys TTT
4
Asp ATC
1
Glu CTC
2
Glu TTC
3
His ATG
3
His GTG
7
Gln CTG
2
Ile AAT
5
Ile GAT
2
Ile TAT
13
Met CAT
1
Tyr ATA
3
Tyr GTA
42
Supres TCA
3
Supres CTA
4
Cys ACA
1
Cys GCA
5
Trp CCA
3
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
162
GGC
141
CGC
33
TGC
196
532
GlyACC
4
GCC
69
CCC
36
TCC
137
246
ProAGG
698
GGG
6119
CGG
1331
TGG
32682
40830
ThrAGT
64
GGT
88
CGT
31
TGT
142
325
ValAAC
35
GAC
11
CAC
27
TAC
27
100
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
93
GGA
1166
CGA
6597
TGA
896
ACT
8
GCT
39
 
 
 
 
8799
ArgACG
61
GCG
124
CCG
120
TCG
9637
 
 
 
 
CCT
37
TCT
79
10058
LeuAAG
86
GAG
352
CAG
131
TAG
1200
 
 
 
 
CAA
502
TAA
76
2347
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
14
GAA
92
 
 
 
 
106
AsnATT
4
GTT
39
 
 
 
 
43
Lys 
 
 
 
CTT
68
TTT
107
175
AspATC
3
GTC
61
 
 
 
 
64
Glu 
 
 
 
CTC
47
TTC
74
121
HisATG
73
GTG
227
 
 
 
 
300
Gln 
 
 
 
CTG
223
TTG
12898
13121
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
80
GAT
13
CAT
 
TAT
33
126
iMet/Met 
 
 
 
CAT
28/28
 
 
56
TyrATA
7
GTA
61
 
 
 
 
68
Supres 
 
TCA
1074
CTA
1042
TTA
118
2234
CysACA
9
GCA
66
 
 
 
 
75
Trp 
 
 
 
CCA
62
 
 
62
SelCys 
 
 
 
 
 
TCA
3
3