tRNA Gene Summary

Overview
High confidence set 547
tRNAs decoding standard 20 AA 546
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 212
Unexpected anticodons 11
Non-canonical anticodon loop length 4
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 226527
Secondary filter (low feature scores, possible rep. element) 29805
Tertiary filter (excessive isotype copies, possible rep. element) 430

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 36)
Arg TCT
5
Leu CAA
6
Ile TAT
5
Met CAT
1
Tyr GTA
19
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
29
GGC
 
CGC
8
TGC
16
53
GlyACC
 
GCC
14
CCC
10
TCC
11
35
ProAGG
12
GGG
 
CGG
5
TGG
7
24
ThrAGT
10
GGT
 
CGT
5
TGT
7
22
ValAAC
11
GAC
 
CAC
10
TAC
5
26
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
15
GGA
 
CGA
4
TGA
4
ACT
 
GCT
14
 
 
 
 
37
ArgACG
9
GCG
 
CCG
4
TCG
9
 
 
 
 
CCT
8
TCT
6
36
LeuAAG
10
GAG
 
CAG
5
TAG
4
 
 
 
 
CAA
6
TAA
6
31
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
24
 
 
 
 
24
AsnATT
 
GTT
20
 
 
 
 
20
Lys 
 
 
 
CTT
22
TTT
23
45
AspATC
 
GTC
13
 
 
 
 
13
Glu 
 
 
 
CTC
13
TTC
29
42
HisATG
 
GTG
12
 
 
 
 
12
Gln 
 
 
 
CTG
12
TTG
7
19
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
13
GAT
1
CAT
 
TAT
5
19
iMet/Met 
 
 
 
CAT
14/17
 
 
31
TyrATA
 
GTA
19
 
 
 
 
19
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
28
 
 
 
 
28
Trp 
 
 
 
CCA
10
 
 
10
SelCys 
 
 
 
 
 
TCA
1
1