tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Fri Jan 18 20:30:11 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         5466
Seqs w/at least 1 hit:  1435
Bases read:             2615516299 (x2 for both strands)
Bases in tRNAs:         28874542
tRNAs predicted:        394828
Av. tRNA length:        73
Script CPU time:        605.43 s
Scan CPU time:          32188.07 s
Scan speed:             162.5 Kbp/sec

First pass search(es) ended: Fri Jan 18 21:30:07 PST 2019

Infernal Stats:
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Candidate tRNAs read:     394828
Infernal-confirmed tRNAs:     257562
Bases scanned by Infernal:  36770986
% seq scanned by Infernal:  0.7 %
Script CPU time:          2072.29 s
Infernal CPU time:            156010.80 s
Scan speed:               235.7 bp/sec

Infernal analysis of tRNAs ended: Mon Jan 21 00:17:11 PST 2019

Overall scan speed: 27405.3 bp/sec