tRNA Gene Summary

Overview
High confidence set 547
tRNAs decoding standard 20 AA 546
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 212
Unexpected anticodons 11
Non-canonical anticodon loop length 4
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 226527
Secondary filter (low feature scores, possible rep. element) 29805
Tertiary filter (excessive isotype copies, possible rep. element) 430

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 6074)
Ala AGC
10
Ala GGC
42
Ala CGC
5
Ala TGC
173
Gly ACC
162
Gly GCC
2038
Gly CCC
126
Gly TCC
147
Pro AGG
7
Pro GGG
8
Pro CGG
3
Pro TGG
6
Thr AGT
8
Thr GGT
7
Thr CGT
1
Thr TGT
21
Val AAC
11
Val GAC
69
Val CAC
4
Val TAC
27
Ser AGA
8
Ser GGA
38
Ser CGA
4
Ser TGA
10
Ser ACT
26
Ser GCT
201
Arg ACG
7
Arg GCG
58
Arg CCG
9
Arg TCG
4
Arg CCT
20
Arg TCT
32
Leu AAG
8
Leu GAG
15
Leu CAG
10
Leu TAG
2
Leu CAA
16
Leu TAA
10
Phe AAA
9
Phe GAA
60
Asn ATT
5
Asn GTT
21
Lys CTT
8
Lys TTT
17
Asp ATC
18
Asp GTC
172
Glu CTC
29
Glu TTC
83
His ATG
60
His GTG
61
Gln CTG
15
Gln TTG
11
Ile AAT
22
Ile GAT
12
Ile TAT
11
Met CAT
4
Tyr ATA
28
Tyr GTA
146
Supres TCA
58
Supres CTA
15
Supres TTA
14
Cys ACA
200
Cys GCA
1457
Trp CCA
185
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
124
GGC
322
CGC
151
TGC
1121
1718
GlyACC
1545
GCC
18430
CCC
10155
TCC
8339
38469
ProAGG
42
GGG
87
CGG
16
TGG
55
200
ThrAGT
147
GGT
53
CGT
24
TGT
116
340
ValAAC
112
GAC
419
CAC
257
TAC
304
1092
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
257
GGA
3526
CGA
515
TGA
450
ACT
335
GCT
2306
 
 
 
 
7389
ArgACG
503
GCG
1980
CCG
387
TCG
158
 
 
 
 
CCT
1068
TCT
1079
5175
LeuAAG
72
GAG
188
CAG
133
TAG
26
 
 
 
 
CAA
1279
TAA
193
1891
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
405
GAA
2886
 
 
 
 
3291
AsnATT
59
GTT
252
 
 
 
 
311
Lys 
 
 
 
CTT
278
TTT
626
904
AspATC
234
GTC
1747
 
 
 
 
1981
Glu 
 
 
 
CTC
2007
TTC
5744
7751
HisATG
347
GTG
1444
 
 
 
 
1791
Gln 
 
 
 
CTG
333
TTG
265
598
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
455
GAT
103
CAT
 
TAT
58
616
iMet/Met 
 
 
 
CAT
17/99
 
 
116
TyrATA
1787
GTA
7160
 
 
 
 
8947
Supres 
 
TCA
4072
CTA
1200
TTA
393
5665
CysACA
24828
GCA
120431
 
 
 
 
145259
Trp 
 
 
 
CCA
13358
 
 
13358
SelCys 
 
 
 
 
 
TCA
1
1