tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (Sept 2017) scan results 
Started: Mon Oct 30 23:36:06 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           vert
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         5678
Seqs w/at least 1 hit:  296
Bases read:             927696114 (x2 for both strands)
Bases in tRNAs:         169741
tRNAs predicted:        2282
Av. tRNA length:        74
Script CPU time:        126.25 s
Scan CPU time:          4954.79 s
Scan speed:             374.5 Kbp/sec

First pass search(es) ended: Tue Oct 31 00:10:27 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     2282
Infernal-confirmed tRNAs:     1198
Bases scanned by Infernal:  215381
% seq scanned by Infernal:  0.0 %
Script CPU time:          14.71 s
Infernal CPU time:            971.15 s
Scan speed:               221.8 bp/sec

Infernal analysis of tRNAs ended: Tue Oct 31 00:33:29 PDT 2017

Overall scan speed: 305822.1 bp/sec