tRNA Gene Summary

Overview
High confidence set 621
tRNAs decoding standard 20 AA 620
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 7
Unexpected anticodons 5
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 409
Secondary filter (low feature scores, possible rep. element) 147
Tertiary filter (excessive isotype copies, possible rep. element) 2

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 91)
Ala TGC
1
Gly TCC
1
Thr AGT
2
Val AAC
1
Val CAC
1
Ser AGA
1
Arg TCT
23
Leu CAA
8
Leu TAA
2
Asp ATC
1
Ile AAT
1
Ile TAT
26
Tyr ATA
3
Tyr GTA
19
Cys GCA
1
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
26
GGC
29
CGC
13
TGC
21
89
GlyACC
3
GCC
18
CCC
9
TCC
14
44
ProAGG
16
GGG
4
CGG
6
TGG
12
38
ThrAGT
23
GGT
6
CGT
13
TGT
73
115
ValAAC
63
GAC
5
CAC
17
TAC
19
104
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
5
CGA
11
TGA
19
ACT
21
GCT
14
 
 
 
 
83
ArgACG
16
GCG
 
CCG
7
TCG
7
 
 
 
 
CCT
22
TCT
29
81
LeuAAG
18
GAG
 
CAG
25
TAG
9
 
 
 
 
CAA
9
TAA
20
81
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
6
GAA
29
 
 
 
 
35
AsnATT
1
GTT
10
 
 
 
 
11
Lys 
 
 
 
CTT
47
TTT
18
65
AspATC
2
GTC
11
 
 
 
 
13
Glu 
 
 
 
CTC
15
TTC
21
36
HisATG
4
GTG
20
 
 
 
 
24
Gln 
 
 
 
CTG
15
TTG
9
24
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
39
GAT
2
CAT
 
TAT
33
74
iMet/Met 
 
 
 
CAT
23/112
 
 
135
TyrATA
3
GTA
20
 
 
 
 
23
Supres 
 
TCA
26
CTA
 
TTA
2
28
CysACA
4
GCA
45
 
 
 
 
49
Trp 
 
 
 
CCA
12
 
 
12
SelCys 
 
 
 
 
 
TCA
1
1